Detailed information on CNT30392708


BLAST search results

BLAST vs Swiss-Prot:
sp|P46259|TBA1_PEA, E-value = 5e-37

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596030Triticum turgidumOryza meridionalis93.0210091.67240forward
CNT30147962Triticum turgidumBrachypodium distachyon53.140.4193.43137forward
CNT3065151Triticum turgidumSelaginella moellendorffii29.8437.3887.0177forward

Expression of CNT30392708

Peptides detected in this lncRNA

>peptide 1 (73 aa)
AETGLYLRNEPVEVGVCWALNVKGAAADVIDGLIVKEDSHISVLKERVGGQDTVVWLDNRGIPEDQCSCLQAS*

>peptide 2 (47 aa)
MLGAQCQGSGGRCHRWPHCQGGQPHQCAQGESGWTGHCCMARQQRNP*

>peptide 3 (48 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTEESLKTSAVVCKLPDTVQA*

Sequence

>CNT30392708
GCAGAAACAGGGCTATACCTGAGAAACGAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCA
TTGTCAAGGAGGACAGCCACATCAGTGTGCTCAAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCGACAACAGAGGAATCCCTGAAGACCAGTG
CAGTTGTCTGCAAGCTTCCTGATACGGTCCAGGCATAGGTCAACAATCTCCTTGCCAA