Detailed information on CNT30392703


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299782Triticum turgidumTriticum aestivum4.2428.9596.177reverse complement
CNT30667627Triticum turgidumTriticum dicoccoides7.7747.6485.11141forward
CNT30142095Triticum turgidumLolium perenne5.7952.2484.76105forward
CNT30687812Triticum turgidumTriticum urartu12.29100.4589.24223forward

Expression of CNT30392703

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSTKFSQFETEVLIFYELYCDMVIEFLALEGTVNTELC*

>peptide 2 (38 aa)
MCMGADTYISWSAAPHNCVYYALFFDKRKMLQFHCPGV*

>peptide 3 (40 aa)
MLLRSSYNLTSYSKNYLNDILCAFGNSTRCTFKLLLKTIT*

>peptide 4 (63 aa)
MVLDSQIGLNDFGTNKQKQKIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX*

>peptide 5 (33 aa)
MTYYVHLAILQDAPSNCCLKQLHDYNKISQDYI*

>peptide 6 (37 aa)
MAGAGSSSSAPGKGRFTRSTSLLRSKAYQWYWIARSG*

>peptide 7 (71 aa)
MVRRAGQRKVSRGGRSMRPALSGEKERKGKGKEWRRRSLPSLAGRAAWLSSSAPARERAAGLERGARGEMN*

>peptide 8 (66 aa)
MIFDCNLWTFSQQPARCAWVPTHIYLGLRLHTTVFTMRCFLIKGRCCSFIVQVYKSCSHVYKVFSI*

Sequence

>CNT30392703
ATGTTACTTAGGAGTTCATATAATTTGACAAGTTACTCAAAGAATTACTTGAATGACATACTATGTGCATTTGGCAATTCTACAAGATGCACCTTCAAAT
TGTTGCTTAAAACAATTACATGATTATAATAAAATTTCACAAGACTATATCTAATGTTATTATTATTTTACCAATCTCAATACTATGTTACATATGGTCG
AGTTAAAGAACTCTCATAGGTTAATTAAGGATTAATGGAACGACACACTACATGATATTTCTTGTGTTATGGACAATCATCTATAAATACCATACTTCCT
TTCTTCTAGAATACACGATGTTTTTAGTGTAGACAGTCTCCAGGATGTAGCCTGACCATTATTCTGTACATGATTTTTGATTGCAATCTCTGGACCTTCT
CGCAACAGCCGGCTAGATGTGCATGGGTGCCGACACATATATATCTTGGTCTGCGGCTCCACACAACTGTGTTTACTATGCGCTGTTTTTTGATAAAAGG
AAGATGCTGCAGTTTCATTGTCCAGGTGTATAAAAGTTGTAGCCATGTCTACAAAGTTTTCTCAATTTGAAACTGAAGTGTTGATTTTCTATGAGCTATA
TTGCGACATGGTAATTGAATTTTTGGCCTTAGAAGGCACTGTGAATACAGAATTGTGTTAGGTTGATCTCCTCCCGATCGAGCCCAACGGCTCGACGGAC
CCTTGACCCGCGCCCTGAACGGGGGCGCCAAACCAAACCCTGGTTGGTGGGCCCCTGTGACCCGCGCTATATAACAGAGGTGGGGGCCAGGGCACGACTC
ACGAGGTTGAACGCTGACACAAAACCCACCGAACACTACCTACCGATCTAGGGTAAGCGCGGTGCTCACGGGAAGCACACCACCGCCGCCATCTCTGTCC
ACATCGCCGCCGTCACCACACCACCATGGCCGGTGCTGGATCGAGCTCATCCGCGCCTGGAAAAGGTAGGTTCACCAGATCTACTAGCCTACTACGATCT
AAGGCCTATCAATGGTATTGGATAGCCAGATCGGGCTAAATGATTTCGGTACAAACAAACAAAAACAGAAAATAAAAAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TAAAAAAGAACCAATAGTTGACCGGAGAAGGCCTTGGGCCGCCGGCAAAGAGCGTCGTCGTCAGGCCGCGCCTGTTCCTCTTGATCCCCACACGCATCGG
CAAGCCGAGGTGTGGGGACGAAGAACCACCCTGCAAAGGGCAAAGGGGGCACCGCAGCCACGTCGTTCGACGGCGGCGCGCTTCTGCTAAGTGAAACGCG
TCACCGGCGAAAAGGAGGCAACAGCACCACAGATCGTCGCCAGACACACAGGGAAGCGCTCCGTCGCGCCTCACTCGCCGCTCTCTGCCACTGGATTCGG
TGGATGGGGAGAAAAAGAGAGGGAAAGGAGAAAGAAAAGAGCGTTGCGGCACGGCGCAGTGGTCGTTGACGCCCTCGCCGGCGAGCTGGCATGACACGAT
GGTCCGGCGTGCAGGACAGAGGAAGGTGAGCAGAGGAGGGCGCAGCATGCGTCCCGCTCTCTCTGGGGAAAAGGAAAGGAAGGGGAAGGGGAAAGAGTGG
CGCCGGCGTTCATTGCCGTCGCTGGCTGGCAGGGCGGCGTGGCTGAGCAGCTCAGCGCCGGCGCGAGAGAGAGCCGCGGGGTTAGAGAGAGGCGCGCGGG
GAGAAATGAACTAGG