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Detailed information on CNT30392462


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 1e-69

BLAST vs NONCODE:
NONGMAT000219, E-value = 1e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223592Triticum turgidumHordeum vulgare26.627.6999.07108forward
CNT30119652Triticum turgidumCitrus clementina54.6829.1382.88222forward
CNT30575645Triticum turgidumOryza barthii65.5231.3791.73266forward

Expression of CNT30392462

Peptides detected in this lncRNA

>peptide 1 (82 aa)
WLVVDTTLETSGAPVHKLDGALRLDGGHSGVDILGHNITTVHEAAGHVLAVAGVTLGHHGGRLEGAVGDLGNRELLMVSLLG*

>peptide 2 (59 aa)
MVRFVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEEGSKALLVISATESCSW*

Sequence

>CNT30392462
GTGGCTGGTAGTTGATACCACACTTGAAACCAGTGGGGCACCAGTCCACAAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACAGCGGCGTTGACATC
CTTGGGCACAACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTG
TTGGTGATCTCGGCAACAGAGAGCTGCTCATGGTAAGCCTTCTCGGCTGAGATCACTGGGGCGTAGGAGGAAAGCATGAAGTGGATTCTTGGGTAGGGCA
CCAGAGAGCCGCTCCAGGAGAAGAGAACCAAGGCCAGAGCCAGTTCCACCTCCAACAGCATTGAAGACGAGGAATCCCTGAAGACCAGTGCAGTTGTCTG
CAAGCT