« Back to Triticum turgidum search


Detailed information on CNT30392448


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295231Triticum turgidumTriticum aestivum95.9695.0598.2499forward
CNT30258377Triticum turgidumAvena sativa88.0867.1683.62458forward
CNT30662351Triticum turgidumTriticum dicoccoides97.1295.198.61505forward
CNT30136185Triticum turgidumLolium perenne103.4681.6485.87538forward
CNT30352984Triticum turgidumEragrostis tef26.7323.7687.77139forward

Expression of CNT30392448

Peptides detected in this lncRNA

>peptide 1 (62 aa)
TYNIQAVFMFTGGNTNTEECTPKMSSLFITQAIQMVPVFHLSLFSRNLISSSSYPIIIYSNQ*

>peptide 2 (53 aa)
MFFKSQLSSFPLEASHMPASVQDPSEAYPSHPSEAYPSRPSEVDPPYQAEQARR

Sequence

>CNT30392448
TAACATATAACATACAGGCAGTGTTTATGTTCACGGGTGGCAACACCAACACGGAGGAGTGTACACCCAAAATGTCTAGTCTTTTTATCACACAAGCTAT
ACAAATGGTACCAGTCTTCCACCTCTCACTCTTCAGCCGGAACCTAATCTCATCCTCATCCTACCCGATCATAATATATAGCAACCAGTAAATTTACTCT
ACCTCGGCTAGAGATATTGCTCGCCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAACCAATAGCCCAAATCAATCTACAACTTGAAAGATAC
CTTTGGGATCCTCATGCTCCCTCTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCTTCAAAAGCCAACTCAGTAGTTTCCCATTGGAGGCATC
CCATATGCCGGCATCGGTCCAGGACCCATCGGAGGCATACCCATCCCACCCATCGGAGGCATACCCATCCCGCCCATCGGAGGTGGACCCCCCATACCAG
GCGGAGCAGGCAAGGCGAGA