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Detailed information on CNT30392320


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 6e-39

BLAST vs NONCODE:
NONZMAT000139, E-value = 4e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Triticum turgidumOryza sativa9839.6891.84196forward
CNT30671877Triticum turgidumSetaria viridis898988.76178forward
CNT30522081Triticum turgidumSetaria italica9833.8592.35196forward
CNT30180108Triticum turgidumSecale cereale9788.5888.66194forward
CNT30221546Triticum turgidumHordeum vulgare9785.0988.14194forward
CNT30554471Triticum turgidumOryza glaberrima9735.2188.14194forward
CNT30439818Triticum turgidumAegilops tauschii99.566.5698.99199forward
CNT30249006Triticum turgidumAvena sativa9722.392.27194forward
CNT30447838Triticum turgidumSaccharum spontaneum9887.8991.84196forward
CNT30684370Triticum turgidumTriticum urartu7651.3597.37152forward
CNT30721558Triticum turgidumTriticum spelta99.588.84100199forward
CNT30341741Triticum turgidumEragrostis tef8728.7187.93174forward
CNT30361377Triticum turgidumSorghum bicolor8915.8189.33178forward
CNT30596661Triticum turgidumOryza meridionalis9653.6387.5192forward
CNT30369862Triticum turgidumOryza glumipatula97.588.6491.79195forward
CNT30106627Triticum turgidumOryza longistaminata97.596.0691.79195forward
CNT30148227Triticum turgidumBrachypodium distachyon83.566.2785.03167forward
CNT30102585Triticum turgidumOryza rufipogon9654.5588.54192forward
CNT30575680Triticum turgidumOryza barthii9878.7191.84196forward
CNT30496422Triticum turgidumDigitaria exilis8928.8587.08178forward
CNT30116256Triticum turgidumOryza nivara9886.3492.35196forward
CNT30593977Triticum turgidumEragrostis curvula8980.1889.33178forward
CNT30556802Triticum turgidumPanicum hallii9621.7288.54192forward

Expression of CNT30392320

Peptides detected in this lncRNA

>peptide 1 (65 aa)
RWLSPSHHFHSTREVPSRTPPCSLSPWRASKLRRMLFTMRMQRKPLPTSPLSVHITDSSRYSGLNG

>peptide 2 (32 aa)
SAGCRPRTTSTARGRCRRERRRAPCRRGERQS*

>peptide 3 (65 aa)
ALVVALAPLPQHEGGAVANAAVLLVAVESVKVEADVVHHANAAEALADVAALRPHHGLVEVLRVEW

Sequence

>CNT30392320
AGCGCTGGTTGTCGCCCTCGCACCACTTCCACAGCACGAGGGAGGTGCCGTCGCGAACGCCGCCGTGCTCCTTGTCGCCGTGGAGAGCGTCAAAGTTGAG
GCGGATGTTGTTCACCATGCGAATGCAGCGGAAGCCCTTGCCGACGTCGCCGCTCTCCGTCCACATCACGGACTCGTCGAGGTACTCCGGGTTGAATGGT