Detailed information on CNT30391876


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 2e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Triticum turgidumOryza sativa10044.8987.5224forward
CNT30515426Triticum turgidumJuglans regia31.255.3388.5770forward
CNT30295032Triticum turgidumTriticum aestivum83.4835.8294.12187forward
CNT30568235Triticum turgidumActinidia chinensis43.332.4483.5197forward
CNT3083687Triticum turgidumVigna radiata28.126.6287.363forward
CNT30555564Triticum turgidumOryza glaberrima10050.5688.84224forward
CNT30438780Triticum turgidumAegilops tauschii10027.995.54224forward
CNT30247768Triticum turgidumAvena sativa10036.8492.86224forward
CNT30663140Triticum turgidumTriticum dicoccoides10032.4695.09224forward
CNT30472632Triticum turgidumSaccharum spontaneum1004.5888.39224forward
CNT30136796Triticum turgidumLolium perenne37.9512.4594.1285forward
CNT30232050Triticum turgidumAnanas comosus60.2711.8582.22135forward
CNT30721366Triticum turgidumTriticum spelta84.3836.7794.18189forward
CNT30365247Triticum turgidumSorghum bicolor83.4827.5488.24187forward
CNT30151249Triticum turgidumBrachypodium distachyon10042.9990.62224forward
CNT30104226Triticum turgidumOryza rufipogon10046.8687.95224forward
CNT30581659Triticum turgidumEchinochloa crusgalli28.129.7892.0663forward
CNT30117820Triticum turgidumOryza nivara10028.7287.95224forward
CNT30176592Triticum turgidumVigna angularis37.0510.1885.5483forward

Expression of CNT30391876

Peptides detected in this lncRNA

>peptide 1 (73 aa)
LLGRLVDVLLVVGDERLGDGLADGVDLARLPAAANADAHVDVLEAGPAGKQDRLEGLQTEHLRADELDRRAVDL

>peptide 2 (37 aa)
MRMSMSLKRDLPASRIGSKAFRRSISGRMSSIGAPLTL

>peptide 3 (43 aa)
PSWPPRRRTSGSRRRATWRWPGGWSRSGSSSRRRERGCACRCP*

Sequence

>CNT30391876
CCTTCTTGGCCGCCTCGTCGACGTACTTCTGGTAGTAGGCGACGAGCGACTTGGCGATGGCCTGGCGGATGGAGTAGATCTGGCTCGTCTTCCCGCCGCC
GCGAACGCGGATGCGCATGTCGATGTCCTTGAAGCGGGACCTGCCGGCAAGCAGGATCGGCTCGAAGGCCTTCAGACGGAGCATCTCAGGGCGGATGAGC
TCGATCGGCGCGCCGTTGACCTTG