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Detailed information on CNT30391643


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103845Triticum turgidumOryza rufipogon20.8527.3584.43122forward
CNT30578311Triticum turgidumOryza barthii21.0327.4683.74123forward

Expression of CNT30391643

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PLPKYRYKYTVSFNKSILPGTKPKPLNTKCNI*

>peptide 2 (29 aa)
TTKIQIQIHRVVQQKHSSRYKTQTSEHKV*

Sequence

>CNT30391643
CCACTACCAAAATACAGATACAAATACACCGTGTCGTTCAACAAAAGCATTCTTCCAGGTACAAAACCCAAACCTCTGAACACAAAGTGTAACATATAAC
ATACAGGCAGTGTTTATGTTCACGGGTGGCAACACCAACACGGAGGAGTGTACACCCAAAATGTCTTAGTCTTTTTATCACACAAGCTATACAAATGGTA
CCAGTCTTCCACCTCTCATTCTTCAGCTGGAACCTAATCTCATCCTCATCCTACCCGATCATAATATATAGCAACCAGTAAATTTACTCTACCTCGGCTA
GAAATATTGCTCGCCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAACCAATAGCCCAAATCAATCTACAACTTGAAAGATACCTTTGGGATC
CTCATGCTCCCTCTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCTTCAAAAGCCAACTCAGTAGTTTCCCATTGGAGGCATACCCATCCCGC
CCATAGGAGGCATACCCATGCCGCCCATAGGAGGTGGACCCCCCATACCAGGCGGAGCAGGCAAGGCGAGAGGGAGCAATTGAGC