Detailed information on CNT3039151


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4VZP2|RPOC1_CUCSA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001055, E-value = 4e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Cucumis meloQuercus lobata62.224.4694.17532forward
CNT3019361Cucumis meloCitrullus lanatus20.5857.7100176forward
CNT30632296Cucumis meloVigna unguiculata89.8291.7689.58768forward
CNT30202316Cucumis meloPisum sativum58.48100.688.6500forward
CNT3085011Cucumis meloVigna radiata37.3198.4688.09319forward
CNT30314046Cucumis meloCamelina sativa99.5322.291.77851forward
CNT3082978Cucumis meloBrassica juncea62.226.5591.92532forward
CNT30129950Cucumis meloCorymbia citriodora26.4345.5692.04226forward
CNT30154455Cucumis meloPrunus persica26.229.8785.27224forward
CNT3057109Cucumis meloAmborella trichopoda61.7523.5486.36528forward
CNT30100313Cucumis meloOryza rufipogon25.1594.386.05215forward

Expression of CNT3039151

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MIGLNSGGRTGNRHKTIHSGSIFVRIKCLANSIRLTKKSFLLPTFRSSHSLHAGPSSPNSFHSTNE*

>peptide 2 (50 aa)
MLYFQDWISYSNEPRNRKKVGFLAIGLAKEKSQYTKPSNSLRGLSKRFAI*

>peptide 3 (60 aa)
MGYWACQFNIAHLISSYPRINKFDSALFTKFRIFFFISDYSIISTSTNPAFYRPKNSFTK*

Sequence

>CNT3039151
ACTAATTCTCCTGGCGTAGATCTACTTGTTGTTAATAGATCAATAAGAGTATTGTTCCGATATATAACTCTTCTATAGAGTTCATTAATATCCGAGCTCA
TTAGTTTACCCCCATCTATCTGAATGATCGGTCTCAACTCGGGAGGAAGAACAGGTAATAGACATAAAACCATCCATTCGGGTTCTATATTTGTTCGAAT
AAAATGCTTAGCTAATTCCATACGTCTAACCAAAAAATCCTTTCTTCTTCCAACTTTTCGATCTTCCCATTCATTACATGCGGGTCCTTCTTCGCCTAAT
TCTTTCCATTCTACCAACGAATAATCTATAATAAGTCGCAAATCCAGATCGGCTAATTGTTCTCGTATAGCCCCTGCTCCAGTAGAAATTTCTCGATTTC
GAAATGTATCGAAGCCTTGGGTAGTAAAAAAAAGTGGGATGCTGTATTTCCAGGATTGGATTTCATATTCGAATGAACCCCGTAATCGTAAGAAAGTAGG
TTTTTTAGCTATAGGCCTAGCAAAAGAAAAATCGCAATATACTAAGCCTTCTAATTCTTTAAGAGGTTTATCTAAAAGATTCGCGATATAACTAGGAAGA
CGTTTTAAATACCACACATGGGTTACTGGGCATGCCAGTTTAATATAGCCCATTTGATATCTTCGTATCCGAGAATCAACAAATTCGACTCCGCATTGTT
CACAAAATTTCGAATCTTCTTTTTTATCTCCGATTACTCGATAATTTCCACAAGCACAAATCCCGCTTTTTATAGGCCCAAAAATTCTTTCACAAAATAA
TCCATCTTTTTCAGGTTTATTGGTTTTGTAATGAAAAGTATAGGGTTTTGTTACC