« Back to Triticum turgidum search


Detailed information on CNT30391503


BLAST search results

BLAST vs Swiss-Prot:
sp|P12463|PSBA_WHEAT, E-value = 2e-79

BLAST vs NONCODE:
NONCQUT000002, E-value = 2e-144

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Triticum turgidumOryza sativa7027.6996350forward
CNT30378683Triticum turgidumArabidopsis thaliana70.443.8492.05352forward
CNT30196112Triticum turgidumPisum sativum70.676.2490.08353forward
CNT30300480Triticum turgidumTriticum aestivum70.426.8799.15352forward
CNT3089384Triticum turgidumVigna radiata45.227.8390.27226forward
CNT30540534Triticum turgidumBrassica napus70.430.6692.61352forward
CNT30555706Triticum turgidumOryza glaberrima51.637.6695.35258forward
CNT30145403Triticum turgidumMedicago truncatula32.660.5993.25163forward
CNT30598581Triticum turgidumFraxinus excelsior53.275.3586.09266forward
CNT30447572Triticum turgidumSaccharum spontaneum30.68.8992.81153forward
CNT3018289Triticum turgidumZea mays70.413.5695.45352forward
CNT30605440Triticum turgidumGossypium raimondii62.476.2892.31312forward
CNT30655381Triticum turgidumRosa chinensis23.421.8793.16117forward
CNT30627896Triticum turgidumDaucus carota70.423.9987.5352forward
CNT30685372Triticum turgidumTriticum urartu70.438.3999.43352forward
CNT30720298Triticum turgidumTriticum spelta11.225.3410056reverse complement
CNT30349424Triticum turgidumEragrostis tef30.635.0193.46153forward
CNT30360309Triticum turgidumLactuca sativa69.460.3587.03347forward
CNT3058320Triticum turgidumAmborella trichopoda70.650.7989.52353forward
CNT30147990Triticum turgidumBrachypodium distachyon28.29.3199.29141forward
CNT30102095Triticum turgidumOryza rufipogon27.658.9796.38138forward

Expression of CNT30391503

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSSHNIISFFLLTKFVTLISRFILTFSIFANK*

Sequence

>CNT30391503
TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATGATATTAGCCCAAGTATTAA
TAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTAC
TACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATA
TTATAAGTTTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATATTGACCTTTTCTATCTTTGCCAATAAATGATGAGCTACAAAAGGATT
CGTTTTTTTTCGTGTCACAGCTGATTACTCCTTTTTTCCTTTTTAAAGAGTGGCATTCTATGTCCAATATCTCGATCGAAGTACGGAGGTCAGAATAAAT