Detailed information on CNT3039143


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNS4|PSBB_ATRBE, E-value = 6e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200101Cucumis meloPisum sativum39.0328.0792.4434forward
CNT30491922Cucumis meloOlea europaea14.7556.5590.24164forward
CNT30504398Cucumis meloNicotiana attenuata29.3221.4687.73326reverse complement
CNT3047375Cucumis meloPrunus dulcis24.8289.3294.93276forward
CNT3090302Cucumis meloSolanum tuberosum12.1421.3394.81135forward
CNT30283847Cucumis meloTriticum aestivum38.1331.0489.39424forward
CNT30597766Cucumis meloFraxinus excelsior26.5360.9590.85295reverse complement
CNT3068316Cucumis meloLeersia perrieri16.8232.388.24187forward
CNT30654158Cucumis meloRosa chinensis11.5140.3885.16128reverse complement
CNT30203008Cucumis meloHelianthus annuus28.1528.4390.1313forward
CNT30414626Cucumis meloPapaver somniferum36.0691.1494.26401forward
CNT30644762Cucumis meloCannabis sativa21.8556.7885.19243reverse complement
CNT30110673Cucumis meloOryza longistaminata13.3154.6191.89148forward
CNT3021701Cucumis meloPopulus trichocarpa22.318.990.73248forward

Expression of CNT3039143

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MHYMNRKQTTGIIQYNGMNTIPRQTHGNTPLSRKNRHYVTLLH*

>peptide 2 (42 aa)
MVFPRSLPRSRYPLFRPRRIDLIIKNLEREVQLDLFFGGYPD*

>peptide 3 (36 aa)
MYTYLFIIQKPIREEVSLINSVFLFYELIKSMYKIC*

>peptide 4 (43 aa)
MKGITNIPCLHIGSRTGSEGSKTANSYRAIEPAQPATRAVCII*

>peptide 5 (33 aa)
SSQNISRSQYTQCQIAAKKHNPENTICAPATPS*

>peptide 6 (30 aa)
MEQFDSIRRNKKKQIYSILDKYQYAMVDGN*

Sequence

>CNT3039143
GTTCATCACAAAATATTTCTAGATCCCAATACACCCAATGCCAGATAGCTGCTAAGAAGCACAATCCAGAAAACACAATATGTGCTCCGGCCACACCTTC
GTAACTCCAAATACCCGGATTCGTTATAGTCCCTCCTGTGATACTCCAACCCCCCCATGAATTGGTTATTCCTAAACGAGTCATGAAGGGTATAACGAAC
ATACCCTGTCTCCACATTGGATCAAGAACAGGATCAGAGGGATCAAAAACTGCTAATTCGTATAGGGCCATTGAACCGGCCCAACCAGCAACTAGAGCTG
TATGCATTATATGAACAGAAAGCAAACGACCGGGATCATTCAATACAACGGTATGAACACGATACCAAGGCAAACCCATGGAAATACCCCTTTATCAAGG
AAAAATAGACACTATGTAACTTTATTGCACTGAAAAAAAAACTATGCTACGGACCTCCCCTTTTGAGGGGATTATCTTGGCGAAAGGATTAATATTTAGT
CTATTCTTTTAGTAATAATGGAACAATTCGATTCTATTCGTAGGAACAAAAAGAAGCAGATCTATTCTATACTCGATAAGTACCAATACGCAATGGTAGA
TGGGAATTGATCCTATTTTATAGGAGTGAATGTATACATACTTGTTCATCATTCAAAAACCTATTCGGGAAGAAGTTTCCCTTATTAATTCTGTTTTCCT
TTTTTATGAACTTATTAAATCTATGTATAAAATATGCTAAAAGATAAAATCTGATAAAGGCCCATCTTATTTATTAAGACAATAAACCCGTTGTTACGCT
TCCACATCAAAGTTAGCTATAGTACTTAATTCTTTTTTCTTTGCTTTAATGCCTATTGGTGTTCCAAAAGTACCTTTTCGAAGTCCCGGAGAGGAAGACG
CATCGTGGGTTGACATATAGTGCGACTTGTCAGATATATTGGGTCATATGGTATTTCCCCGTTCTCTCCCCCGATCGAGATATCCTCTCTTTCGCCCAAG
ACGGATTGATTTAATCATCAAAAATTTAGAGCGTGAAGTGCAATTAGATCTATTTTTTGGGGGGTATCCAGATTAATATTATCAATTAGAATAATTTATG
GTTTTCTTGGTT