Detailed information on CNT30391333


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 1e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678664Triticum turgidumSetaria viridis60.1796.5298.34361forward
CNT30481523Triticum turgidumChara braunii10.8327.0895.3865forward
CNT30576813Triticum turgidumOryza barthii32.8326.7398.98197reverse complement
CNT30604015Triticum turgidumOryza punctata80.510099.59483forward
CNT30551087Triticum turgidumOryza brachyantha46.593.6298.21279forward

Expression of CNT30391333

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGKISLLSLE*

>peptide 2 (74 aa)
LLSLHPRMGGEPVAVSAVIPEALGKSEERALILGWAYYLYAFSSYPLRTWLPSVYRRHDNWYTRGASFPVLSML*

>peptide 3 (49 aa)
MLSAVILSALGYPVFTVGTITGTPEVRPSRSSQCSNAHTGYGPNCLTTF*

>peptide 4 (56 aa)
TSVAPSPYGWRTRRCLGCDTGGSREVGGESTHLGVGLLLICFQQLSSPHLATQCLP*

Sequence

>CNT30391333
TACTTCTGTCGCTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGATACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTT
GGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGTGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCG
TCCTTCCCGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGA
ACAGCCCAACCCTTGGAACCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCAGC
CTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTGCTCGACGGGTGAG
TCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCAATGTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC