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Detailed information on CNT30391302


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522325Triticum turgidumSetaria italica49.877.9287.85247forward
CNT30640997Triticum turgidumNymphaea colorata17.9423.3685.3989forward
CNT30223464Triticum turgidumHordeum vulgare30.2474.2691.33150forward
CNT30562758Triticum turgidumActinidia chinensis22.7821.5284.07113forward
CNT30135707Triticum turgidumLolium perenne51.8128.1290.66257forward
CNT30100638Triticum turgidumOryza rufipogon25.244.0194.4125forward
CNT30576296Triticum turgidumOryza barthii25.226.5494.4125forward

Expression of CNT30391302

Peptides detected in this lncRNA

>peptide 1 (53 aa)
AAQLLREVRDADGVVEDAVGAVVVGVGPAGDADDGQVLAVGAARARRRGGRAA*

>peptide 2 (32 aa)
SAAPARSPGCRWCGGGCGWCRSRWSWARRRCR*

>peptide 3 (69 aa)
MIGHPGADAGQPTAPFTAAGDGPSTEPMWVSIAVNRSIDPGGTLVEWERRQREGTWGFGEYSTPWWGFC*

Sequence

>CNT30391302
GCAGCGCAGCTCCTGCGAGAAGTCCGGGATGCCGATGGTGTGGTGGAGGATGCGGTTGGTGCCGTAGTCGTTGGAGTTGGGCCCGCCGGCGATGCAGATG
ACGGGCAGGTTCTCGCTGTAGGCGCAGCCCGGGCTCGTCGACGAGGTGGTCGAGCAGCGTGAGGTTGAAGTCCCCGGGCACGGCGAAGACGTCGCTGACG
CCGACCTGCACGAGGCGGCGCGCCAGGTGGCGCCCCAGCGACGCCTCGCCTGCGGAGACCACGGGGTGGGAGGACATGATCGGGCACCCCGGCGCGGACG
CCGGGCAGCCGACCGCGCCGTTCACCGCCGCCGGCGACGGCCCGTCGACGGAGCCGATGTGGGTGTCCATCGCTGTCAATCGATCGATCGATCCGGGTGG
CACACTGGTGGAGTGGGAGCGGCGGCAGAGGGAGGGGACGTGGGGTTTTGGGGAATATTCTACACCTTGGTGGGGATTTTGCTAAGCTGTTCCGTT