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Detailed information on CNT30391299


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 1e-117

BLAST vs NONCODE:
NONGMAT000778, E-value = 2e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Triticum turgidumSetaria viridis67.4557.8891.91371forward
CNT30640184Triticum turgidumNymphaea colorata62.3645.3183.38343forward
CNT30547574Triticum turgidumIpomoea triloba42.1865.3585.78232forward
CNT30405823Triticum turgidumBeta vulgaris42.9152.4484.32236forward
CNT30488117Triticum turgidumOlea europaea42.3647.7584.98233forward
CNT30224110Triticum turgidumHordeum vulgare50.7394.2698.21279forward
CNT30143750Triticum turgidumMedicago truncatula3424.4183.42187forward
CNT30440874Triticum turgidumAegilops tauschii65.4573.7796.39360forward
CNT30612508Triticum turgidumArabis alpina73.6415.9680.74405forward
CNT30445994Triticum turgidumSaccharum spontaneum20.738.0189.47114forward
CNT30210789Triticum turgidumHelianthus annuus13.2720.1784.9373forward
CNT30359537Triticum turgidumLactuca sativa60.3650.3881.93332forward
CNT30705326Triticum turgidumPrunus avium50.1821.4884.06276forward
CNT3024028Triticum turgidumPopulus trichocarpa33.2724.7686.34183forward

Expression of CNT30391299

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTVRQDFSRTVSRKETTGGETIISAPPMKSSCRSFKQISR*

>peptide 2 (35 aa)
MICSPDSSMLQRTIGSDLARRFKPSTSLGRSEATLH

>peptide 3 (89 aa)
MLVGGLAHDSAAGLLQNSLTEGDDRRGNNNFSTTHEVLLQILQTDFKVKLSSSSNDMLTRLFNATENHRVRLGQTLQTLNKLRKIRSHLA

>peptide 4 (89 aa)
SAPSFDAHWNPATTESLISFRYCTPLHMSTTMLGPVVSGPKHQIFLARSLSQPNSSDRILERTLGSSRGPMRPSSMASASPSSNGRASM*

Sequence

>CNT30391299
TAGTGCTCCTTCTTTTGATGCCCACTGGAACCCAGCCACAACAGAGTCCTTGATTTCATTCAGGTACTGCACTCCCTTACACATGTCCACAACCATGTTG
GGGCCAGTCGTCTCAGGTCCAAAGCACCAAATCTTCTTGGCAAGATCCTTGTCCCAACCAAACTCCTCAGACAGGATCTTGGAGCGCACCTTAGGATCAT
CACGTGGGCCAATGCGGCCATCATCAATGGCCTCAGCCAGTCCCTCCTCCAATGGGCGAGCTTCCATGTAGAGACGGTTATGCTTGTTGGGGGACTTGCT
CATGACAGTGCGGCAGGACTTCTCCAGAACAGTCTCACGGAAGGAGACGACAGGAGGGGAAACAATAATTTCAGCACCACCCATGAAGTCCTCCTGCAGA
TCCTTCAAACAGATTTCAAGGTGAAGCTCTCCAGCTCCAGCAATGATATGCTCACCAGACTCTTCAATGCTACAGAGAACCATAGGGTCAGACTTGGCCA
GACGCTTCAAACCCTCAACAAGCTTAGGAAGATCAGAAGCCACCTTGCAC