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Detailed information on CNT30391100


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697771Triticum turgidumOryza sativa25.1647.6685.62153forward
CNT30677121Triticum turgidumSetaria viridis14.1421.6688.3786forward
CNT30183781Triticum turgidumSecale cereale88.3278.6297.39537forward
CNT30438855Triticum turgidumAegilops tauschii88.82100.3797.96540forward
CNT30662804Triticum turgidumTriticum dicoccoides89.8100100546forward
CNT30104515Triticum turgidumOryza rufipogon25.1630.9784.97153forward
CNT30118046Triticum turgidumOryza nivara25.1639.1385.62153forward

Expression of CNT30391100

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFFKSQLSSFPLEASHMPASDQDPSEAYPCRP*

>peptide 2 (30 aa)
PKYRYKYTVSFNKSILPGTKPKPLNTKCNI*

Sequence

>CNT30391100
TACCAAAATACAGATACAAATACACCGTGTCGTTCAACAAAAGCATTCTTCCAGGTACAAAACCCAAACCTCTGAACACAAAGTGTAACATATAACATAC
AGGCAGTGTTTATGTTCACGGGTGGCAACACCAACACGGAGGAGTGTACACCCAAAATGTCTTAGTCTTTTTATCACACAAGCTATACAAATGGTACCAG
TCTTCCACCTCTCATTCTTCAGCTGGAACCTAATCTCATCCTCATCCTACCCGATCATAATATATAGCAACCAGTAAATTTACTCTACCTCGGCTAGAAA
TATTGCTCGCCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAACCAATAGCCCAAATCAATCTACAACTTGAAAGATACCTTTGGGATCCTCA
TGCTCCCTCTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCTTCAAAAGCCAACTCAGTAGTTTCCCATTGGAGGCATCCCATATGCCGGCAT
CGGACCAGGACCCATCGGAGGCATACCCATGCCGCCCATAGGAGGTGGACCCCCCATACCAGGCGGAGCAGGCAAGGCGAGAGGGAGCAATTGAGCGTAC
ATGTTCTG