Detailed information on CNT30390938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676908Triticum turgidumSetaria viridis9.5223.929650forward
CNT30297243Triticum turgidumTriticum aestivum44.5778.5294.44234forward
CNT30223766Triticum turgidumHordeum vulgare53.5257.9494.31281forward
CNT30439786Triticum turgidumAegilops tauschii47.0570.1794.74247forward
CNT30662940Triticum turgidumTriticum dicoccoides55.4374.4299.66291forward
CNT30137065Triticum turgidumLolium perenne42.6749.0287.5224forward
CNT30721254Triticum turgidumTriticum spelta56.5753.32100297forward

Expression of CNT30390938

Peptides detected in this lncRNA

>peptide 1 (42 aa)
QHFRFGNNIFVIYAYNVLIDNGFTIYMQGLNQSSFKKSQSGF*

>peptide 2 (29 aa)
MMKTISEITQVAVVRYSHQKSERSCFFCP*

>peptide 3 (35 aa)
MGHRGGACRQIPAGEVDQTVGHYKDAWLRQRISMFQ

Sequence

>CNT30390938
CCAGCACTTCAGATTCGGCAATAATATATTTGTAATCTATGCATACAATGTACTAATCGATAACGGGTTCACTATATATATGCAAGGACTTAACCAATCA
AGTTTCAAAAAGAGTCAATCTGGTTTTTAACGATGATGAAAACCATTTCAGAAATTACTCAAGTAGCAGTGGTCCGATACTCCCATCAGAAATCAGAACG
GTCATGTTTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCAAACTTTTCCCGGTAAAATTCACACAGCACATGCTGCTGCATCGCGC
GCACGCAGCTGATCATCAGCAACCGACGGCGGCGGACGGGCAATAAACGGCCAGCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGTGAG
CAGGCCGAGCGGGTCGAATGGGCCACCGGGGTGGAGCTTGTCGTCAAATTCCTGCCGGAGAAGTTGACCAAACCGTTGGTCACTACAAGGACGCCTGGCT
GCGGCAACGCATATCTATGTTTCAG