« Back to Triticum turgidum search


Detailed information on CNT30390922


BLAST search results

BLAST vs Swiss-Prot:
sp|P08437|H3_VOLCA, E-value = 3e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631185Triticum turgidumVigna unguiculata25.266.3887.8474forward
CNT30184716Triticum turgidumSecale cereale25.9411.1910076reverse complement
CNT30596421Triticum turgidumOryza meridionalis32.4213.5392.6395forward

Expression of CNT30390922

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MASRLLLLLGGGGFETWLWLLRAVELELGGDELGRERRE

>peptide 2 (96 aa)
GSAAPWTSGTCGSHGAPRYLACSGGASSRRRGDAPWWRAACGAPCRRWTCGRSAWYGPWLLAFSCSSAAAASKLGFGCCGRWNSNWEATNWGERGGR

>peptide 3 (96 aa)
ADQQLRGLLVLADLTERHGTWPVAVGLLHAAGETHLGGELLAGRLAAGGLAGGLLGTGHGFSPSPAPRRRRLRNLALVAAGGGTRTGRRRIGEREEG

Sequence

>CNT30390922
GCGGATCAGCAGCTCCGTGGACTTCTGGTACTTGCGGATCTCACGGAGCGCCACGGTACCTGGCCTGTAGCGGTGGGGCTTCTTCACGCCGCCGGGGAGA
CGCACCTTGGTGGCGAGCTGCTTGCGGGGCGCCTTGCCGCCGGTGGACTTGCGGGCGGTCTGCTTGGTACGGGCCATGGCTTCTCGCCTTCTCCTGCTCC
TCGGCGGCGGCGGCTTCGAAACTTGGCTTTGGTTGCTGCGGGCGGTGGAACTCGAACTGGGAGGCGACGAATTGGGGAGAGAGAGGAGGGAGG