« Back to Triticum turgidum search


Detailed information on CNT30390880


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30256287Triticum turgidumAvena sativa59.6868.3686.49296forward

Expression of CNT30390880

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMKTISEITQVAVVRYSHQKSERSCFFCP*

>peptide 2 (36 aa)
NNIFVIYAYNVLIDNGFTIYMQGLNQSSFKKSQSGF*

>peptide 3 (40 aa)
MTAWMKKPSMENMASRPFLISFTLSSAAWSGSVARPSGSNG

Sequence

>CNT30390880
GCAATAATATATTTGTAATCTATGCATACAATGTACTAATCGATAACGGGTTCACTATATATATGCAAGGACTTAACCAATCAAGTTTCAAAAAGAGTCA
ATCTGGTTTTTAACGATGATGAAAACCATTTCAGAAATTACTCAAGTAGCAGTGGTCCGATACTCCCATCAGAAATCAGAACGGTCATGTTTCTTCTGCC
CTTGATAATTTACACGTACGGCACATTCGTACTCTCAAACTTTTCCCGGTAAAATTCACACAGCACATGCTGCTGCATCGCGCGCACGCAGCTGATCATC
AGCAACCGACGGCGGCGGACGGGCAATAAACGGCCAGCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGCCTGGATGAAGAAGCCCAGCA
TGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTGAGCAGCGCCGCCTGGTCGGGGTCGGTGGCGAGGCCGAGCGGGTCGAATGGGC