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Detailed information on CNT30390800


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 5e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697228Triticum turgidumOryza sativa99.5468.7789.91218forward
CNT30676931Triticum turgidumSetaria viridis99.0946.1789.4217forward
CNT30314796Triticum turgidumCorylus avellana60.2719.2184.85132forward
CNT30381342Triticum turgidumManihot esculenta67.5818.3282.43148forward
CNT30541563Triticum turgidumBrassica napus55.2518.1483.47121forward
CNT3075755Triticum turgidumBrassica juncea55.2517.7783.47121forward
CNT30263618Triticum turgidumBrassica rapa55.2517.2181.82121forward
CNT30128108Triticum turgidumCorymbia citriodora43.3818.1687.3795forward
CNT30557055Triticum turgidumPanicum hallii93.6127.4484.88205forward
CNT30724556Triticum turgidumLupinus angustifolius47.0310.4482.52103forward

Expression of CNT30390800

Peptides detected in this lncRNA

>peptide 1 (71 aa)
GDPSLEELEGVAGYFLRGGPVLALSTRGHHAWLQEDALKHDVVLSHVVEGPLDAVLTVEHDLRLHNRHQPIV

Sequence

>CNT30390800
GGGGGATCCTTCTCTGGAGGAGCTTGAGGGTGTAGCTGGCTACTTCCTCAGGGGTGGCCCTGTCCTTGCACTCAGCACCAGGGGTCACCATGCTTGGCTT
CAGGAGGATGCCCTCAAACATGACGTTGTTCTGAGCCATGTAGTAGAAGGTCCTCTCGATGCCGTGCTCACCGTCGAGCATGATCTCAGGCTCCACAATC
GGCACCAGCCCATTGTCCT