« Back to Triticum turgidum search


Detailed information on CNT30390630


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 5e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30437984Triticum turgidumAegilops tauschii55.7895.7799.45362forward

Expression of CNT30390630

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 2 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 3 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

Sequence

>CNT30390630
AATAAAAAATCAAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCT
CTTATTACTCTTGACTTGACTTATTAATAAGAAAACTACTCACTAACAAAATGAAAGATGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACG
AGAAAAGGTCACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGG
AATGTGTACGAGATACCATAAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCTGAAACGCAGGAACGATCTGACTA
GAAAGTCATTCAAAACTTGATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATC
CGCTACAAGATTTACATTATACGCTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCA
AGAATCTCATTTTTTGATAGTACGAAGGGGGAATTGGCCCAAAAATTGG