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Detailed information on CNT30390564


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 2e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Triticum turgidumOryza sativa63.1633.5188.02192forward
CNT30674888Triticum turgidumSetaria viridis83.5535.9394.88254forward
CNT30522155Triticum turgidumSetaria italica61.5121.2789.3187forward
CNT30641079Triticum turgidumNymphaea colorata32.8913.4693100forward
CNT30534291Triticum turgidumEucalyptus grandis61.1829.285.48186forward
CNT30377201Triticum turgidumArabidopsis thaliana55.5929.5588.17169forward
CNT30728063Triticum turgidumCorchorus capsularis57.8920.2889.77176forward
CNT3071804Triticum turgidumQuercus suber23.0311.2585.7170forward
CNT30381383Triticum turgidumManihot esculenta64.1411.187.18195forward
CNT30402401Triticum turgidumBeta vulgaris34.548.8492.38105forward
CNT30629386Triticum turgidumVigna unguiculata26.3231.0191.2580forward
CNT30196370Triticum turgidumPisum sativum58.8818.7888.83179forward
CNT30486254Triticum turgidumOlea europaea28.2922.4588.3786forward
CNT30710178Triticum turgidumGlycine max61.1843.8784.95186forward
CNT3092760Triticum turgidumSolanum tuberosum43.7519.2289.47133forward
CNT30291318Triticum turgidumTriticum aestivum33.8830.9397.09103forward
CNT30223001Triticum turgidumHordeum vulgare75.3382.3797.38229forward
CNT30562825Triticum turgidumActinidia chinensis98.3654.1783.95299forward
CNT30586804Triticum turgidumMusa acuminata92.4336.481.85281forward
CNT30542792Triticum turgidumBrassica napus30.9221.6688.394forward
CNT30511260Triticum turgidumSolanum lycopersicum58.8844.4290.5179forward
CNT30553024Triticum turgidumOryza glaberrima60.8612.9688.11185forward
CNT30442409Triticum turgidumAegilops tauschii33.2215.0791.09101forward
CNT30253208Triticum turgidumAvena sativa61.1815.4790.86186forward
CNT30261872Triticum turgidumBrassica rapa65.4622.4986.43199forward
CNT30614070Triticum turgidumArabis alpina57.5712.6688175forward
CNT305432Triticum turgidumZea mays58.2248.2392.66177forward
CNT3041960Triticum turgidumChlamydomonas reinhardtii64.857.7786.8197forward
CNT30608822Triticum turgidumGossypium raimondii35.5316.1285.19108forward
CNT30209019Triticum turgidumHelianthus annuus64.4723.4784.18196forward
CNT30627268Triticum turgidumDaucus carota50.9912.5287.74155forward
CNT30681848Triticum turgidumTriticum urartu44.4115.2598.52135forward
CNT30720996Triticum turgidumTriticum spelta35.5343.999.07108forward
CNT30341625Triticum turgidumEragrostis tef57.8918.0592.05176forward
CNT30363168Triticum turgidumSorghum bicolor61.5118.9792.51187forward
CNT30595966Triticum turgidumOryza meridionalis27.313.5495.1883forward
CNT30369370Triticum turgidumOryza glumipatula10045.8588.16304forward
CNT30433292Triticum turgidumPapaver somniferum60.8617.6584.86185forward
CNT30570854Triticum turgidumVitis vinifera30.9246.7785.1194forward
CNT30706519Triticum turgidumPrunus avium32.8912.0686100forward
CNT3033661Triticum turgidumTheobroma cacao28.2941.3583.7286forward
CNT3057373Triticum turgidumAmborella trichopoda23.3613.0394.3771forward
CNT3022005Triticum turgidumPopulus trichocarpa92.4336.6484.34281forward
CNT30322043Triticum turgidumAsparagus officinalis57.8921.0385.8176forward
CNT30119164Triticum turgidumCitrus clementina65.1342.4983.84198forward
CNT3036150Triticum turgidumCucumis melo44.0839.7685.82134forward
CNT30332119Triticum turgidumDioscorea rotundata55.9226.7790170forward
CNT30150001Triticum turgidumBrachypodium distachyon26.9725.9589.0282forward
CNT3099512Triticum turgidumOryza rufipogon34.8717.7394.34106forward
CNT30575530Triticum turgidumOryza barthii63.1621.2688.02192forward
CNT30116105Triticum turgidumOryza nivara44.7418.4391.91136forward
CNT30333708Triticum turgidumCynara cardunculus33.8812.7286.41103forward
CNT3049477Triticum turgidumCucumis sativus32.8935.2188100forward

Expression of CNT30390564

Peptides detected in this lncRNA

>peptide 1 (68 aa)
PSSSAVASWYCWYSETRSFMLLSASVNSISSMPSPVYQCKKAFLLNMAVNCSLTLRNISWMEVELPTK*

>peptide 2 (99 aa)
LLISGGILVLLVLRDKVVHVALGLGELHLVHAFTSVPMQESLPPEHGSELLAHPPEHLLDGGGVANEVGRVLVLDVDHLLVHLLCAHLSTEHGRGGEVTA

Sequence

>CNT30390564
CCCTCCTCATCAGCGGTGGCATCCTGGTACTGCTGGTACTCCGAGACAAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATGCCTT
CACCAGTGTACCAATGCAAGAAAGCCTTCCTCCTGAACATGGCAGTGAACTGCTCGCTCACCCTCCGGAACATCTCCTGGATGGAGGTGGAGTTGCCAAC
GAAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCACCTCCTTTGTGCTCATCTTTCCACGGAACATGGCAGAGGCGGTGAGGTAACGG
CCAT