Detailed information on CNT30390510


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188587Triticum turgidumSecale cereale38.1487.1793.31299reverse complement
CNT30342892Triticum turgidumEragrostis tef13.2721.483.65104forward
CNT30106351Triticum turgidumOryza longistaminata15.9430.4185.6125forward

Expression of CNT30390510

Peptides detected in this lncRNA

>peptide 1 (98 aa)
ARTASRRRRPSQSQRSGTSIPGDQTMRRPAASVSVASKVQSVPKKAKEMIHFSRDQLIGLAFVAFGIILFVGFFYAAVVSKMLPPYENWLLSAIQNDS*

>peptide 2 (55 aa)
MGPGTPHIYPALEPTMTEENPWLTRRFEIEIFQDRGQGASWFSSFPVYYSRPGGW*

>peptide 3 (42 aa)
MLAGGSPVNGSWYPSYIPCFGAYYDRREPVANQTIRNRDFPR*

>peptide 4 (52 aa)
MGIRQVSKAKNGQAAVLVVVKATTVAGPSLAHAYAWPGLPCTAAVQKRILQM*

>peptide 5 (60 aa)
MDGYKASKQGKEWASSCACSGQSHNGGRPFSSTCICLAGFAMYCCCSEEDSSNVKAFLFT*

>peptide 6 (34 aa)
PGRRAGDGAHLNLNVAAHRFPATKRCGGRRRVSL*

>peptide 7 (40 aa)
MHMLGRVCHVLLLFRRGFFKCKSLSFYMRWHGFCHRSPLAW

>peptide 8 (37 aa)
MRTGFYLPSKMTANASRRLSCQWVLVPLIYTLLWSLL*

Sequence

>CNT30390510
GCCCGGACGGCGAGCCGGAGACGGCGCCCATCTCAATCTCAACGTAGCGGCACATCGATTCCCGGCGACCAAACGATGCGGCGGCCGGCGGCGAGTGTCT
CTGTAGCATCGAAGGTTCAGTCTGTACCCAAGAAGGCCAAAGAGATGATACACTTTTCTAGAGATCAGCTGATTGGGTTGGCATTTGTTGCATTTGGCAT
CATATTATTTGTGGGTTTCTTCTACGCAGCTGTTGTGTCCAAAATGCTTCCGCCTTATGAGAACTGGCTTCTATCTGCCATCCAAAATGACAGCTAATGC
TAGCCGGAGGCTCTCCTGTCAATGGGTCCTGGTACCCCTCATATATACCCTGCTTTGGAGCCTACTATGACAGAAGAGAACCCGTGGCTAACCAGACGAT
TCGAAATAGAGATTTTCCAAGATAGAGGACAAGGCGCCTCTTGGTTTTCTTCTTTTCCGGTTTACTACAGCCGGCCGGGCGGGTGGTGAAGCACAAGGCA
GCACCCCCCGTTGCCTCAGGCACGCTGTCGTTTGCTATACGTACTTGTTAGTGGGATGTAAATATGGATGGGTATAAGGCAAGTAAGCAAGGCAAAGAAT
GGGCAAGCAGCTGTGCTTGTAGTGGTCAAAGCCACAACGGTGGCAGGCCCTTCTCTAGCACATGCATATGCTTGGCCGGGTTTGCCATGTACTGCTGCTG
TTCAGAAGAGGATTCTTCAAATGTAAAAGCCTTTCTTTTTACATGAGATGGCATGGCTTTTGCCACCGGTCTCCGCTGGCTTGG