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Detailed information on CNT30390478


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 4e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672548Triticum turgidumSetaria viridis24.8346.8490.54296forward
CNT30521214Triticum turgidumSetaria italica35.5757.6988.68424forward
CNT30533956Triticum turgidumEucalyptus grandis14.9325.583.15178forward
CNT30516978Triticum turgidumJuglans regia15.9427.8680190forward
CNT30629841Triticum turgidumVigna unguiculata16.1932.9983.42193forward
CNT30712288Triticum turgidumGlycine max11.9124.6182.39142forward
CNT30182270Triticum turgidumSecale cereale25.0854.1788.96299forward
CNT30292897Triticum turgidumTriticum aestivum51.17103.5795.74610forward
CNT30222663Triticum turgidumHordeum vulgare22.4852.9687.69268forward
CNT30564216Triticum turgidumActinidia chinensis13.1770.484.71157forward
CNT3084712Triticum turgidumVigna radiata10.9946.2983.97131forward
CNT30438727Triticum turgidumAegilops tauschii22.1583.5495.08264forward
CNT30249726Triticum turgidumAvena sativa40.660.3587.4484forward
CNT30662078Triticum turgidumTriticum dicoccoides19.3879.6696.97231forward
CNT30454500Triticum turgidumSaccharum spontaneum16.6954.9787.44199forward
CNT30135064Triticum turgidumLolium perenne22.8247.6488.97272forward
CNT3014188Triticum turgidumZea mays27.5242.9386.28328forward
CNT30610860Triticum turgidumGossypium raimondii5.2921.3687.363forward
CNT30683149Triticum turgidumTriticum urartu21.3957.5696.47255forward
CNT30720963Triticum turgidumTriticum spelta35.6576.3100425forward
CNT30344813Triticum turgidumEragrostis tef22.5751.4388.1269forward
CNT3037642Triticum turgidumCucumis melo9.0640.7582.41108forward
CNT30104607Triticum turgidumOryza rufipogon8.1427.0290.7297forward
CNT30578384Triticum turgidumOryza barthii11.1633.9388.72133forward
CNT30582252Triticum turgidumEchinochloa crusgalli22.7341.1288.93271forward
CNT30115596Triticum turgidumOryza nivara9.3151.6386.49111forward
CNT30556995Triticum turgidumPanicum hallii30.7952.290.74367forward

Expression of CNT30390478

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MDSLKQPPSGRDHMICTHRTCMPIINLLEEVWEVEHVEEEVGPGGTGDTTEEEASGELRPPFSGLQLVGLLLAACERECGRG*

>peptide 2 (41 aa)
MIDPCKDCEECVNSFIHGLFEATTIGKRSHDLHPSYMHANN*

>peptide 3 (32 aa)
MYEIHEDLQQRKSVLNRLILSISCNCNGPCQT*

>peptide 4 (60 aa)
MPRGLEHTKPLFITWLAIGGAYAVAISISFNSHTHNSALPAATNGWMCYSKKICQDGKMF*

>peptide 5 (45 aa)
MLWPSRSPSTPTRTTLLCLQLQMDGCVTARRFVRMARCFSGSKGEG

Sequence

>CNT30390478
GTGGTACGTACTACGTAGTATCATCCATGCAAAGATTATGAGGAATATGTAAATTTATTTATACATAGACTCGTTCAAGCAACCACTGAGAAGAGATCAC
ATCATCTAGGTTATAAGTTAAGTTTCTTATTGGGTTTTGTTTATGCACGCATTATTTAAGAAATTAGCAATTCGCATGTTATAGTATCGTAGTATGATCG
ATCCATGCAAAGATTGTGAGGAATGTGTAAATTCATTTATACATGGACTCTTTGAAGCAACCACCATCGGGAAGAGATCACATGATCTGCACCCATCGTA
CATGCATGCCAATAATTAATCTACTTGAAGAAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGGTGGCACCGGAGACACCACCGAAGAAGA
AGCCTCCGGTGAACTGCGACCACCCTTCAGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCTGTGAGCGTGAGTGCGGGCGCGGTTGACGGTGCGCC
CTCGTTGAAGGACGCGACACCGTACATGGTGAGGCAGACGCTAAGGATGGAGACGAGGCCGATGGCGCCGAGAGTGCCTGCCTGGCCGTGAATTGGCGTG
TTGCGGAGCGGGCCGGTGAGCGCGAAGGGGCCGACCAGGAGGTAGCCGTGGGCGAGGCCGACCTCGATGCCGCGGAGGAGCGGGCTGACGGCGGTGCGGT
AGGCGGGGAGGTTTGAGAGGTACCAGGCGACGAGGGGGCTGGAGGTGACGGGCGTCTCCAGGCTGCCGATGAATGGGTCGCCGTTGATGGGCTGGACCAC
CTGGTACGTCGGCTGTTTGTAGAAGAGACAGGAGACACAAGAATATGTATGAGATACACGAAGACTTGCAACAAAGGAAAAGTGTGCTGAATCGCTTAAT
TTTGTCTATCTCTTGCAATTGCAACGGACCTTGTCAGACTTGACGGCCTTGACGACGAGGCGGGGCCTCCTGGTGAGCGAAGCGCCGGACATGCCCCGCG
GCTTGGAGCACACCAAGCCGCTCTTCATCACCTGGCTCGCCATCGGAGGAGCATATGCTGTGGCCATCTCGATCTCCTTCAACTCCCACACGCACAACTC
TGCTCTGCCTGCAGCTACAAATGGATGGATGTGTTACAGCAAGAAGATTTGTCAGGATGGCAAGATGTTTTAGTGGCTCCAAGGGAGAGGGG