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Detailed information on CNT30390425


BLAST search results

BLAST vs Swiss-Prot:
sp|P07747|CYB_WHEAT, E-value = 4e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30592530Triticum turgidumMusa acuminata22.0124.8291.35208forward
CNT30552006Triticum turgidumOryza glaberrima31.4316.8898.32297forward
CNT30443845Triticum turgidumAegilops tauschii42.2282.2798.25399forward
CNT30309525Triticum turgidumCamelina sativa9.120.8297.6786forward
CNT3081844Triticum turgidumBrassica juncea24.9733.7693.64236forward
CNT30229709Triticum turgidumAnanas comosus18.135.9297.08171forward
CNT30627910Triticum turgidumDaucus carota15.3430.0290.34145forward
CNT30681037Triticum turgidumTriticum urartu52.2840.8994.94494forward
CNT30482869Triticum turgidumChara braunii15.3455.7780145forward
CNT30148125Triticum turgidumBrachypodium distachyon17.7860.2296.43168forward

Expression of CNT30390425

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRRGGHRISRYIIVGMPQNIRSKKNPNGKK

>peptide 2 (43 aa)
MFASRGKRKARKRISSGLRTERSLSRFGTKPGKNPKCCLKNAI*

>peptide 3 (30 aa)
MLPAIFSFPPPSYLGLHNLPPEACICFPPL*

>peptide 4 (34 aa)
EALIPTPLSPPNQQVVGWWASVSLFAKMDTYTTQ*

>peptide 5 (39 aa)
MVPPQVDIRSNLVVSNPPKATKIFLGESVENLNYAHTFL*

>peptide 6 (44 aa)
MAMAKRIRCDESHPCNILEFLFQLIPEWALWQRTRRKRQKEFVQ*

>peptide 7 (49 aa)
MSLIRVIFWNSSSNSSRNGRYGKEQEEKDRRNLSNSNKWCLHRLTSDPT*

Sequence

>CNT30390425
GAAGCCCTCATACCCACTCCTCTTTCCCCACCAAACCAACAAGTAGTAGGTTGGTGGGCCTCGGTATCTCTATTTGCTAAGATGGATACCTACACCACTC
AATAGTTCCAATTCATTGTTTTTTATCCCATAGGAAAGAAAATGCTTCCAGCAATTTTTTCCTTTCCTCCTCCGTCATACTTAGGTCTTCACAATCTTCC
ACCGGAGGCTTGTATCTGTTTTCCTCCTCTTTAGCCATTACTTCTTTAATCATATCTTTGATCTTATTTAGGGGAAATTTAAACATGTTCGCATCCCGCG
GGAAGCGGAAAGCCAGAAAGAGAATTTCCTCCGGTTTAAGAACCGAAAGGAGTTTATCCAGATTTGGTACCAAACCCGGGAAAAACCCTAAATGTTGTCT
TAAAAACGCTATATAAGCAGGGTTATAGGAATCAATAGATTCCCCTCCCTCCGCTTCGGAGGAGCAGCTTCTTCTATGGCTATGGCCAAAAGGATCCGGT
GCGATGAGTCTCATCCGTGTAATATTTTGGAATTCCTCTTCCAACTCATCCCGGAATGGGCGTTATGGCAAAGAACAAGAAGAAAAAGACAGAAGGAATT
TGTCCAATAGTAACAAATGGTGCCTCCACAGGTTGACATCCGATCCAACCTAGTAGTAAGCAATCCGCCAAAAGCAACCAAAATATTCCTTGGTGAATCG
GTCGAAAACTTGAACTACGCACATACATTTCTTTAAAAAAAGGTAAAGCCAAGAGAGATATAAAAACTGGTGCTATTGCAGCTACACCTCCCGCTTTGTC
AGGTATACTACGAAGAATGGCATGGATCGGTAGGAAATACCATTCCGGCACAATATGAGGCGGGGTGGGCATCGGATTAGCAGGTATATAATTGTCGGGA
TGCCCCAAAACATTAGGAGCAAAAAAAATCCAAATGGAAAAAAAG