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Detailed information on CNT30390355


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3048357Triticum turgidumPrunus dulcis24.353.0583.43169forward
CNT30300733Triticum turgidumTriticum aestivum28.5394.7499.49198forward
CNT30219855Triticum turgidumHordeum vulgare34.2995.298.74238reverse complement
CNT30566352Triticum turgidumActinidia chinensis29.5456.0187.8205forward
CNT3067537Triticum turgidumLeersia perrieri27.0963.7392.55188forward
CNT30688894Triticum turgidumTriticum urartu81.767.58100567forward
CNT30357533Triticum turgidumLactuca sativa87.4659.6391.27607reverse complement
CNT30148151Triticum turgidumBrachypodium distachyon47.4123.597.87329forward
CNT30102868Triticum turgidumOryza rufipogon32.71101.3496.04227forward

Expression of CNT30390355

Peptides detected in this lncRNA

>peptide 1 (57 aa)
RQFKRLTYLGISGSMLIFNSPKHFVACYALPRLWVPRYPPQAFPLLNLAINVKAMPS*

Sequence

>CNT30390355
CAGGCAGTTTAAAAGGTTGACCTATTTGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTC
TGGGTGCCTAGGTATCCACCGCAAGCCTTTCCTCTTTTGAACCTCGCCATTAACGTTAAGGCTATGCCATCCTAAGGTGCTACTAAATGGAAGGATCTTA
TCAACGTCCATGAATGTGAAATCATAGATCGAACTGCCGAATTGGCAAAATTCGGTGCTATCGCTATCATAGTATCCGCTAAGTTCACGGGCTGGAGATA
AGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACCGCCTCTCAGGCCTCCCCGACGGGTTCTACCATAGAGGCCAACGATAGACAATAACTCC
CCCCCGAACACAGCTTACAACTTTCATCGTACTGTGCTCTCCAAAGAGCAACTCTTCTCAAAATCTCAAAACAAAAGGTGCTGAGTTGGAATCCCATTCT
AAGGATTCTTGTGGTTCCGGGGAATCCAGTTACAGGAGAACCAGGAACGGGGAGCTCTCCCCTTTTTCCGCCCGACTCTTTGATCTTAAGAATGATGGTT
TTAAGAACGAGTGATTGCCCTTCTCCGACCCTTACTGCCCAACCGGAGAGCGGACGGCTAATGTGTTCCACTTATTGAACAGGGTCTATGGTCG