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Detailed information on CNT30390300


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30551896Triticum turgidumOryza brachyantha55.2864.7187.18429forward

Expression of CNT30390300

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MDSLKQPPSGRDHMICTHRTCMPIINLLEEVWEVEHVEEEVGPGGTGDTTEEEASGELRPPFSGLQLVGLLLAACERECGRG*

>peptide 2 (38 aa)
MLWPSRSPSTPTRTTLLCLQLQMDGCVTARRFVRMARCF

>peptide 3 (60 aa)
MPRGLEHTKPLFITWLAIGGAYAVAISISFNSHTHNSALPAATNGWMCYSKKICQDGKMF*

>peptide 4 (41 aa)
MIDPCKDCEECVNSFIHGLFEATTIGKRSHDLHPSYMHANN*

Sequence

>CNT30390300
AAGCAACCACTGAGAAGAGATCACATCATCTAGGTTATAAGTTAAGTTTCTTATTGGGTTTTGTTTATGCACGCATTATTTAAGAAATTAGCAATTCGCA
TGTTATAGTATCGTAGTATGATCGATCCATGCAAAGATTGTGAGGAATGTGTAAATTCATTTATACATGGACTCTTTGAAGCAACCACCATCGGGAAGAG
ATCACATGATCTGCACCCATCGTACATGCATGCCAATAATTAATCTACTTGAAGAAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGGTGG
CACCGGAGACACCACCGAAGAAGAAGCCTCCGGTGAACTGCGACCACCCTTCAGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCTGTGAGCGTGAG
TGCGGGCGCGGTTGACGGTGCGCCCTCGTTGAAGGACGCGACACCGTACATGGTGAGGCAGACGCTAAGGATGGAGACGAGGCCGATGGCGCCGAGAGTG
CCTGCCTGGCCGTGAATTGGCGTGTTGCGGAGCGGGCCGGTGAGCGCGAAGGGGCCGACCAGGAGGTAGCCGTGGGCGAGCGAAGCGCCGGACATGCCCC
GCGGCTTGGAGCACACCAAGCCGCTCTTCATCACCTGGCTCGCCATCGGAGGAGCATATGCTGTGGCCATCTCGATCTCCTTCAACTCCCACACGCACAA
CTCTGCTCTGCCTGCAGCTACAAATGGATGGATGTGTTACAGCAAGAAGATTTGTCAGGATGGCAAGATGTTTTAG