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Detailed information on CNT30390237


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9TL02|YCF3_NEPOL, E-value = 2e-34

BLAST vs NONCODE:
NONZMAT001155, E-value = 9e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Triticum turgidumOryza sativa40.3515.6794.38872forward
CNT30549732Triticum turgidumIpomoea triloba8.3848.5382.32181reverse complement
CNT30730408Triticum turgidumCorchorus capsularis13.9363.6490.37301forward
CNT30632355Triticum turgidumVigna unguiculata15.538.5988.66335forward
CNT3094383Triticum turgidumSolanum tuberosum5.4654.8888.98118reverse complement
CNT30194121Triticum turgidumSecale cereale29.9472.2998.15647forward
CNT30589320Triticum turgidumMusa acuminata6.7630.0494.52146forward
CNT30510815Triticum turgidumSolanum lycopersicum11.853.4687.06255forward
CNT30556045Triticum turgidumOryza glaberrima40.3526.7294.38872forward
CNT30171250Triticum turgidumTrifolium pratense4.6727.6791.09101forward
CNT30245953Triticum turgidumAvena sativa11.3892.4890.24246reverse complement
CNT30446760Triticum turgidumSaccharum spontaneum52.75100.9791.931140forward
CNT3018049Triticum turgidumZea mays86.4456.3292.131868forward
CNT30232528Triticum turgidumAnanas comosus39.8943.5687.12862forward
CNT30217417Triticum turgidumKalanchoe fedtschenkoi10.2747.4490.54222forward
CNT30214788Triticum turgidumHelianthus annuus3.7925.7184.1582forward
CNT30689226Triticum turgidumTriticum urartu57.2966.7797.91238forward
CNT30596972Triticum turgidumOryza meridionalis26.7546.293.08578forward
CNT3022800Triticum turgidumPopulus trichocarpa10.2765.2991.44222forward
CNT30332506Triticum turgidumDioscorea rotundata14.0233.2691.42303forward
CNT30149145Triticum turgidumBrachypodium distachyon31.4237.8194.11679forward
CNT30103641Triticum turgidumOryza rufipogon31.5198.9892.51681forward
CNT30575481Triticum turgidumOryza barthii8.9836.1394.33194reverse complement
CNT30116311Triticum turgidumOryza nivara17.45100.5392.31377forward
CNT30604206Triticum turgidumOryza punctata9.215093.97199forward
CNT30558183Triticum turgidumPanicum hallii9.9583.0191.16215reverse complement
CNT30550879Triticum turgidumOryza brachyantha1053.8797.22216reverse complement

Expression of CNT30390237

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVYSYEISYKIEGIRNGYNEILDSILRPNLFD*

>peptide 2 (33 aa)
MLPTDTNRVGLACNPYHTISCRCNLSLNTQIYN*

>peptide 3 (44 aa)
MVLFKFKALRNLQPVLCFNIISRSKRYSLFPIFSSLIKPSFRNF*

>peptide 4 (51 aa)
MLEENDSSNNFFVLNASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

>peptide 5 (37 aa)
MACSPRSESKFLPLEPYLRVSYLIRLRNCYLNFPYLN*

>peptide 6 (34 aa)
MDQQPNHPFYEKEGAWSYSNSKRFVIFNQFCASI*

>peptide 7 (35 aa)
MNRKGLVFFQEISSQPSHKRFFLTPMNSINARGKR*

Sequence

>CNT30390237
CTAGTGTATTTTTTTTGAAGGCATAAGCTCCTATCTATATCTACTTTCCTTGAGCATAATATAGGGTTTTTTATTTGATTCTAAATTCCAAGATAACTCA
TTAGAATTATTAATAAGATGGTCCTAATATATTAGCAATTTTTAGATTGAACCCTCTTTTTATTCACTTTATTACTTCTATTCTAGACCCTATCCCTATG
GTTTATTCTTATGAAATATCATATAAAATAGAAGGTATAAGAAATGGATATAATGAAATTCTTGATTCGATCTTACGACCTAATTTATTTGATTAATGGA
TCAACAACCAAACCACCCATTTTATGAAAAAGAAGGAGCATGGTCTTATTCAAATTCAAAGCGCTTCGTAATCTTCAACCAGTTCTGTGCTTCAATATAA
TTTCCCGGAGTAAGCGCTATAGCTTGTTTCCAATATTCAGCAGCTTGATCAAACCAAGCTTCCGCAATTTCTGAATCACCCTCTAGAATGGCCTGTTCTC
CTCGGTCGGAAAGTAAGTTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTCAGAAATTGCTATCTGAATTTCCCCTATCTTAACTG
AATTCGATTTATCAAAAATCGATCCAATTTGTTCTTGGGTCTAAGCAGAAGAAATTAATTACCTAAGTTTCAAACCCTAATTTTTTATCAATAATCAGTT
TGATCTTTTTTCCCACCTTCAGAAGAATGAAGCATAGATAGATATAGAGCCTTCGTTCAAATTTTCTGAAAGGTAACTATCCCGGTTTCATATATGAAAT
CTCTATAGAATCCTTGAAAAAGACTTTTTTCCATACCATAAGAAAGAAAAAAGAACTTACTATCTTTGGGATCTGATACTACACTGCTGCTTAATCCCTT
AGTGGATCAGCTCTATTACATAAGCGGATTCCTAAATTTTGCCCCATATCATGGGATAAGTAAGCAGTTTTTTTTAGTTGTATCGACCCAGTCGCTCACT
AATTGATCTTTACGGTGCTTTCTCTATCAATTTGAGAAACTTTATCCATAGAGTAGTAGTATAGGCCATACTTTCTTCGTTTTTTGATTCTCGTGAAGTG
TCCTTCCTTCCTACAGCTGATAGGGAAAAATTGTTGTTTTTACAATCCCTATGTAGAAAGCCCTTTTTTTCTAGTATTTACTAGAAAATTCGATCCTCTT
TTTTTTTCTTTCTATAGTGGAGATAGTCGCACGTAATGACAGATCATGGCCATATTATTAAAAGCTTGCGGTAAGAAGGGGTTTGGTTCTAGTGCCCGGA
AATAATATTACAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCTATGTTATAGAGTATATAACTTCGATCATAGGGATCGATTTCTAGTCG
TGTAGCTTCATAATAATTTTGCAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCAACATCCGTTACGGTCGTTCATTCTATTCAAAAAATCTCCGTTCC
AAAACCATACATGAGGTTTTCATCTCATACGGCTCCTCCCTTCTGTACATAATAGTACTAAGCGAAATAATCTATAGAATCAAAATAGAATTAGTCCCGT
CTCATTATGAACCGAAAGGGGCTGGTATTTTTCCAAGAAATCTCAAGCCAACCTTCCCACAAGAGGTTTTTCTTAACACCAATGAATTCTATTAATGCTA
GAGGAAAACGATAGCTCCAATAATTTCTTTGTTCTCAACGCCTCCTATTTAGAGGAATTAGCTACTTCAACGATCTTTGATGGTTATAGGGGTATCCAAA
GTACAAACCTGATGGTTGTTTGTTATCCCAACCATTCTTCCCAGCCCTGATACCGATCAGGAAAGGGGTAATTTCTAACAAAGTTTTTCTCTTGTTGATT
CCTATTTCTAGGTGTAGTGCTTTTCTCCCCTATGCTGCCTACGGATACTAATAGAGTAGGATTGGCCTGTAATCCATACCATACCATATCCTGTAGGTGT
AACCTTTCGCTCAATACTCAAATCTACAATTGAAGTATCTGAAGCCGCATCAATCGAGGATACACGACGGAAGGAATTGTTAGTTCGCCTCACCTTCCCG
AAGCGTGGGTTTGTTTGCTTTACAAATTTGGTTCTCTCTATGCCAACCCCTTCTCTTTTTC