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Detailed information on CNT30390158


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 7e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577102Triticum turgidumOryza barthii32.1188.9999.01202forward

Expression of CNT30390158

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAMA*

>peptide 2 (41 aa)
MELNQVTLQWHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 3 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

Sequence

>CNT30390158
AATAAAAAATCAAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCT
CTTATTACTCTTGACTTGACTTATTAATAAGAAAACTACTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACG
AGAAAAGGTCACAAATGGAGTTGAACCAAGTAACATTGCAATGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGG
AATGTGTACGAGATACCATAAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCAAAACGCAGGAACGATCTGACTA
GAAAGTCATTCAAAACTTGATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATC
TGCTACGAGATTTACATTATACGCTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCA
AGAACCTCATTTTTTGGTAGTACGAAGGG