« Back to Triticum turgidum search


Detailed information on CNT30389925


BLAST search results

BLAST vs Swiss-Prot:
sp|Q37680|NU5M_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224150Triticum turgidumHordeum vulgare15.29100.4798.6215forward
CNT3089649Triticum turgidumVigna radiata52.289.9593.32734forward
CNT30171414Triticum turgidumTrifolium pratense7.0428.4587.8899reverse complement
CNT30655408Triticum turgidumRosa chinensis37.788.9394.53530forward
CNT30207123Triticum turgidumHelianthus annuus5.7631.6495.0681reverse complement
CNT30627905Triticum turgidumDaucus carota70.2739.3595.65988forward
CNT30683092Triticum turgidumTriticum urartu10063.5999.221406forward
CNT30104537Triticum turgidumOryza rufipogon8.6139.6797.52121reverse complement
CNT30725625Triticum turgidumLupinus angustifolius86.269.795.381212forward

Expression of CNT30389925

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTLFRSFCNILVVAARNDVIAPAKVITIKVVGEYLNKGEHLAIMKTPAVTIVAA*

>peptide 2 (49 aa)
MNVTTINITTVRLSNTESKVNYESGQSTNRASSPCNDVVVNLSFVFSAL*

Sequence

>CNT30389925
CAGGTCACACTTTGGCCAAGTATCCTACAAAGAGACTCCCGAGAGCCAAAAGTATTAAAGGAATGGCCATAGGAATGGGCGCATCATGACATCGTAATCT
GTCTCGCCCGAATGAATTAGTTGGTACTAGAAATGTTAGAAATAGTAAACGAAAGGAGTAATAAGAAGTGAAAAGGACAGAGACACTTCCCAACCAGAAA
GCAAAGTTCCCACTGATGGTATACTTTGTGTAAGCGAGCTCTAAGATCACATCTTTAGAATAAAATCCTGTTAGAAAAGGAAATCCAATAAGAGATAAGC
TACCCATGAGCATCATGGCATAGGTCAAAGGGAAGGAGGAGGCAAGCCCCCCCCCATCTTCCGCATATCTTGCTCATCCGACATGGCATGAATCACCGAA
CCCGCACTCAGGAAGAGTAATGCTTTGAAAAACGTGTGATTCATTAAGTGAAAGACGCTAACCGAATAGTTAGAGATGCCGCAAGCAAAGATCATATAGC
CTAATTGACTGCAAGTTGAATAAGCTATGACCCTCTTTAGATCGTTCTGTAATATTCTAGTGGTTGCCGCAAGGAATGACGTCATAGCTCCTGCAAAAGT
AATAACAATCAAAGTCGTAGGTGAGTATTTAAATAAAGGGGAGCACCTTGCTATCATGAAAACGCCAGCAGTGACCATAGTAGCTGCATGAATCAAAGCA
GATACTGGAGTGGGACCCTCCATTGCATCGGGTAACCAAGTATGCAATCCTATCTGTGCAGATTTCCCAACAGCACCAATAAAAAGTAAAATACAAATCA
GAGTTATGGCATTCAATCTCATATTGCAAAAAATCCATTCATTTCTGGGAGCACTAGCACAAGCAAAAATGGTTGAAAAGTCTACTGTTTGAAAGAGAGT
AAAACAACCAAAAATCCCAAGAGCTAATCCAAAATCACCTACTCGATTGACAAGCATAGCTTTTATAGCAGCTTTATCCGCCTGAAGTCGTGTAAACCAG
AAATGAATTAACAAATATGAAGCAAGACCTACTCCCTCCCATCCCAGGAATAATTGAAGAAAGTTATCTCCAGTCACCAACATTAGCATAAAAAAAGTAA
AAATGGATAAATAACACATAAATCGAGGGCTATGCGGATCCTCAGACATATATGAAATGGAATAAAGATGGACCAAGCTACTTATGAATGTAACCACAAT
TAACATCACTACGGTCAGGCTATCGAACACAGAGTCAAAAGTGAATTACGAGTCAGGCCAATCTACGAATCGAGCGAGCTCCCCTTGCAATGATGTGGTG
GTGAACCTCTCATTCGTCTTCAGTGCTCTCTGAACCGTGCGGGAAGGTTTCCCATCACACGGCTCACCAACTTGATCTTCTGCGGGAACCTTATGTAAGA
ACAGGC