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Detailed information on CNT30389742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182098Triticum turgidumSecale cereale70.4977.1787.37578forward
CNT304520Triticum turgidumZea mays15.1227.3188.71124forward
CNT30369284Triticum turgidumOryza glumipatula12.0748.0690.9199forward

Expression of CNT30389742

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MKTRMMEKDGGCIYVDLEANIERGSPWNSSGIDGSALGFCCWNLRP*

>peptide 2 (40 aa)
MRPMLSILFGRETRIGSLSVIQSRFITSNNYLQLQIPFIF*

>peptide 3 (60 aa)
MILQRAVGHVLVDEDPLVEVGAVAEQIDEVGVAQEAQHQHLHEELAVPLEPFLVQPLHGDI

Sequence

>CNT30389742
TTTGTGAAGCTTGACTTTTATGAGACCAATGCTCTCTATATTATTCGGCCGAGAGACTAGAATTGGAAGTCTTTCCGTTATTCAATCACGGTTCATCACA
TCCAATAATTATTTGCAACTTCAAATACCTTTTATTTTTTGAGTGTTCTACTAGGGTTATCAATTCCGCAAATCCTCCTCACATAGATTTTAGATTACAT
GAAGACCAGAATGATGGAAAAGGATGGCGGTTGCATATATGTTGATCTAGAAGCTAATATTGAACGTGGCAGTCCTTGGAACAGCTCAGGAATAGACGGC
TCAGCTCTTGGCTTTTGCTGCTGGAATTTGAGGCCTTGACTAACAAATCAGCATCATCAAGTCAAGATGATTCGTTGCTGCTCTTACATCCTGCCTATGT
GGTGTACGGTACACAAGAAATGTGAGGGGGCAGAGATATAGTTCTGCTGCATCTCCTCCCTTATGCATCTCTTATAATATTATATCCTATGGTTGTCTGG
CTCATCTCTGCTTCATGTCATCATCGGCTTTGATCTCAGAAACCATGTCCTTTTTGGGAGGAGTGCTGCAGTCCCCGCCCTTCGCCTGAGCAGCTTCCCG
GTCTCGTTGAGGATAGTATTTCTCTTACCTAGGAGATGATCCTCCAGCGAGCCGTTGGGCATGTACTCGTAGACGAGGATCCGCTGGTCGAGGTCGGTGC
TGTAGCCGAGCAGATTGACGAGGTTGGGGTGGCTCAGGAGGCTCAGCATCAGCACCTCCACGAGGAACTCGCGGTTCCCCTGGAACCCTTCCTTGTCCAG
CCGCTTCACGGCGATATCCT