« Back to Triticum turgidum search


Detailed information on CNT30389619


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675334Triticum turgidumSetaria viridis11.920.5189.0664forward
CNT30249419Triticum turgidumAvena sativa23.2312.7291.2125reverse complement
CNT30115620Triticum turgidumOryza nivara21.1921.1185.09114forward

Expression of CNT30389619

Peptides detected in this lncRNA

>peptide 1 (44 aa)
VGTASPLIILLACVQHRLVENSLAKETGSRVILLITRSFILVHD*

Sequence

>CNT30389619
GTTGGAACTGCTTCTCCGTTAATCATTTTGCTTGCATGCGTGCAGCATCGTTTGGTGGAAAATAGTCTGGCAAAAGAGACTGGAAGCAGAGTAATACTAC
TAATCACGAGAAGCTTTATTCTGGTTCACGATTAGCGCTTATTTAAGCGCTGCACGGGCGCGCGATAGGGGCTGATGGCCGCCAAGCACGCACGCCTGCA
TACGCTATACGACTGTGCGCAACATCACACATACATATACTGCTGACATGCATACATATACACACATCGTAGTGTGCTCCGTTACGTGTAAGCTCAGTCA
TCGGCCCTGACGACGAAGTTCTCCTTGCGCTCGTGGAACTCCCCGGTGCGGGTGTCGAACTCCTGCACGAACGTCTCCTTGACGATGTGCTCCTGCACGC
CGCCGCCGCGGCGGGCCGGGTGGCCCACCGCCCTCACCTCCTCCGAGCAGTAGTCCACCTCCTGGAAGTGCGCCATGCCGATCGGTCGATGTTACTATGT
GCTTGGTTGGGTTTGTGTGTGTTGGTGCGTTGTAGGAC