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Detailed information on CNT30389404


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT003033, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30156864Triticum turgidumPistacia vera24.5324.1395.49355forward
CNT30234026Triticum turgidumBrassica oleracea26.1995.4793.67379forward
CNT30363124Triticum turgidumSorghum bicolor15.89101.3291.3230reverse complement
CNT30118490Triticum turgidumCitrus clementina6.4320.9993.5593reverse complement
CNT30550626Triticum turgidumOryza brachyantha20.87103.0791.72302reverse complement

Expression of CNT30389404

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSNEKSCEKHDRLPVEGFLHSVNLRRVNRSLRNP*

>peptide 2 (44 aa)
PSPSELVDGFDDSTVNIKERRARGRGGSPRADHPIRSDDPGMVQ*

>peptide 3 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ*

Sequence

>CNT30389404
AGCCGAGCCCCTCTGAATTAGTTGACGGCTTTGATGACTCGACGGTGAATATTAAGGAAAGGAGAGCAAGGGGAAGAGGGGGCAGCCCTCGTGCCGATCA
TCCAATTCGCTCCGACGATCCAGGCATGGTTCAGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGG
GACCGATTCACTCTACGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTCT
CACTTCTGATATCTCCAGGTCTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTCCCGCTACTGACACTTGAAAAAGCTGCTTTCAAGGTCTCGTCGC
TTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACC
TCCTGGTTGTCATCACTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTTTGGATCTTA
GCACCCAATCAGTCTGTCTGTACTAAGGATGACGGCCTATATTTGGAGTTTCCCTGGGGTTGGTAAAGCGAAATTGGGGCCACCCTAGCCCATTGAGTGC
TCTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGGTGGCCCCCATTTCGCTTTACCAACC
CCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGATGGAAACAGCCCAGATCGTACGCTA
AGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGC
TCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGA
GACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGA
TCGCCTGCCAGTGGAAGGCTTTCTGCATTCAGTCAATCTACGCAGAGTCAATCGGTCCCTAAGGAACCCCTGAAAGGGCTACCGTCCGATGGGTACACGA
AAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCGCTCTCCTTT
CCTTAATATTCACCGTCGAGTCATCAAAGCCGTCAACTAATTCAGAG