« Back to Triticum turgidum search


Detailed information on CNT30389287


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673415Triticum turgidumSetaria viridis7.872110042forward
CNT30291271Triticum turgidumTriticum aestivum49.8173.4898.5266forward
CNT30134541Triticum turgidumLolium perenne15.1721.6693.8381forward
CNT30681951Triticum turgidumTriticum urartu79.7847.9296.01426forward
CNT30576573Triticum turgidumOryza barthii12.3623.9187.8866forward

Expression of CNT30389287

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMYEEREGTYALWVAVAATRRVAPALPQPQLPPQQDIFEVAWDWMEALIGVGFFCPSC

>peptide 2 (59 aa)
MTDDLAAAAGAAAAGAALALGAAAAAVLRCHLHPAGAPAPIHTHTKINIQSYYSEAHDV*

>peptide 3 (41 aa)
HKHMYKGLNHERFYLGVYMHGMAPALLMQAGAYIHTKTVIR*

>peptide 4 (45 aa)
MRKEKGRTPCGWRWRRRGGWRRRCRSRSFLRSKTSSRLLGIGWRP*

Sequence

>CNT30389287
AACACAAACACATGTATAAGGGGTTAAACCACGAGAGATTTTATTTAGGGGTTTACATGCATGGCATGGCACCTGCTCTGCTCATGCAGGCAGGTGCGTA
CATACATACAAAGACCGTGATCAGGTAGCGTTACATGGTGGTAGATGGATATATAGATAGATCATAGATATGAGGCACGCGGTGCATGCATGACCGATGA
TCTAGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCACTGGGTGCAGCCGCAGCCGCCGTTCTCCGCTGCCATCTCCATCCTGCCGGAGCT
CCTGCACCCATCCATACCCATACCAAGATCAACATACAGTCATATTACAGCGAGGCGCATGATGTATGAGGAAAGAGAAGGGACGTACGCCTTGTGGGTG
GCGGTGGCGGCGACGAGGAGGGTGGCGCCGGCGCTGCCGCAGCCGCAGCTTCCTCCGCAGCAAGACATCTTCGAGGTTGCTTGGGATTGGATGGAGGCCT
TGATTGGTGTTGGCTTCTTTTGTCCTTCTTGCTT