Detailed information on CNT30389102


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30438506Triticum turgidumAegilops tauschii86.7342.7696.72183forward
CNT30249088Triticum turgidumAvena sativa68.2526.7784.72144forward
CNT30133874Triticum turgidumLolium perenne62.0917.4287.02131forward
CNT304540Triticum turgidumZea mays29.386.3588.7162forward
CNT30148757Triticum turgidumBrachypodium distachyon66.8222.9683.69141forward
CNT30101935Triticum turgidumOryza rufipogon34.617.0690.4173forward

Expression of CNT30389102

Peptides detected in this lncRNA

>peptide 1 (56 aa)
PCGWRWRRRGGWRRRPRPRGTCCSRCSRCRTCRRCRSRSFLRSKTSSRLLGIGWRP*

>peptide 2 (69 aa)
LVGGGGGDEEGGAGGLDLGVHVAAAAAVAALAGAAAAAASSAARHLRGCLGLDGGLDWCWLLLCFLLASL

>peptide 3 (68 aa)
LWVAVAATRRVAPAASTSGYMLQPLQPLPHLQALPQPQLPPQQDIFEVAWDWMEALIGVGFFCASCLLA

Sequence

>CNT30389102
CCTTGTGGGTGGCGGTGGCGGCGACGAGGAGGGTGGCGCCGGCGGCCTCGACCTCGGGGTACATGTTGCAGCCGCTGCAGCCGTTGCCGCACTTGCAGGC
GCTGCCGCAGCCGCAGCTTCCTCCGCAGCAAGACATCTTCGAGGTTGCTTGGGATTGGATGGAGGCCTTGATTGGTGTTGGCTTCTTTTGTGCTTCTTGC
TTGCTAGCTTG