Detailed information on CNT30388932


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 2e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674368Triticum turgidumSetaria viridis14.8521.6687.5128forward
CNT30222759Triticum turgidumHordeum vulgare17.5230.2686.09151forward
CNT30454508Triticum turgidumSaccharum spontaneum17.1720.1488.51148forward
CNT30682025Triticum turgidumTriticum urartu39.4456.2999.71340forward
CNT30479293Triticum turgidumArabidopsis halleri9.7433.4784.5284forward

Expression of CNT30388932

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLHRGDVYCTKGHYCHVEQLSRNRLIKHSMKQLGHACH*

>peptide 2 (31 aa)
MLYCYLIKYRHKLHNNFRYASPPEAKPEHML*

>peptide 3 (53 aa)
MDPSSTNSVDKLGLKLGKINGARLDWGHEVLHQGHVVGLSYRNDLQVDIYHPV*

>peptide 4 (37 aa)
MIMSEKKGIDGSFFYKFSRQAWAQTRQNQRSQTRLGA*

>peptide 5 (32 aa)
MLLHLKQNRNTCSDAVHCHLHVDVTKQKLAEF*

>peptide 6 (60 aa)
MRFFTRGMSLDSPIEMIFRLISTILSSFLLNSGFSTSGTAGKILAVVRFVCRDMHQQYHQ*

Sequence

>CNT30388932
GCCATGTGTGATACATAACATATCTACAAAATCGGATGCTATATTGCTATTTAATCAAGTATCGACACAAGTTACATAACAACTTCAGATATGCTTCTCC
ACCTGAAGCAAAACCGGAACACATGCTCTGATGCAGTTCACTGCCACTTACATGTTGATGTGACTAAGCAAAAACTTGCCGAGTTTTAATACTTTACAGA
TGAGCACAGGAGGATGTAGATCCTGTTAATTAACCATGGATCATGTGCTCATTCAGAGACTCTCGAGGAGCATGATGCATGATTATGTCTGAAAAGAAAG
GCATAGATGGATCCTTCTTCTACAAATTCAGTAGACAAGCTTGGGCTCAAACTCGGCAAAATCAACGGAGCCAGACTCGATTGGGGGCATGAGGTTCTTC
ACCAGGGGCATGTCGTTGGACTCTCCTATAGAAATGATCTTCAGGTTGATATCTACCATCCTGTCTAGCTTCCTCTTGAATTCAGGGTTCTCAACATCCG
GTACAGCAGGGAAGATCCTCGCCGTCGTGCGGTTTGTCTGCAGAGATATGCACCAACAGTATCATCAATAGAGGTCTTGATTTACGTCGAAGCTCTAATA
TTGTCATAATAAGCATATAAATAAACTACTCCCGCCGTCCCATAATACAAGAATGTTTTTGATATTAATGTAGTGTCAAAAACACTTTTATATTATGGGA
CAGAGGGAGTAGAGTATAATGCTTCATAGGGGTGATGTTTATTGTACGAAAGGTCATTATTGTCATGTTGAGCAGCTCTCCAGAAACCGCCTGATAAAAC
ACTCAATGAAGCAACTAGGGCATGCATGCCATTAATTGAGTATACAAACAGGAAAAGTCACT