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Detailed information on CNT30388738


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 2e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30210175Triticum turgidumHelianthus annuus56.6697.3492.9366forward
CNT3056795Triticum turgidumAmborella trichopoda64.5578.3892.57417forward

Expression of CNT30388738

Peptides detected in this lncRNA

>peptide 1 (31 aa)
EKELGVGAYITGSLITKPSWQAPTVLLLLLT*

>peptide 2 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 3 (32 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAA

>peptide 4 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 5 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

Sequence

>CNT30388738
GAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGATTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTACTCTTGACTTGACTTA
TTAATAAGAAAACTACTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTG
AACCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATACCATAAGG
GCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTCAAAACTTGATCG
AAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGATTTACATTATACG
CTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTAC
GAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCC