Detailed information on CNT30388443


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 9e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675037Triticum turgidumSetaria viridis96.349.3187.76286forward
CNT30380834Triticum turgidumManihot esculenta53.237.0982.91158forward
CNT30586725Triticum turgidumMusa acuminata30.6413.1987.9191forward
CNT30252412Triticum turgidumAvena sativa26.610.1588.6179reverse complement
CNT30721065Triticum turgidumTriticum spelta35.6947.3297.17106forward
CNT30364150Triticum turgidumSorghum bicolor97.6475.9284.83290forward
CNT30621647Triticum turgidumCajanus cajan25.9333.3387.0177forward
CNT3022287Triticum turgidumPopulus trichocarpa65.3247.281.96194forward

Expression of CNT30388443

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RCSGPWPNCYPHQIAQRRSCQGGRSARKGQCGHCP*

>peptide 2 (97 aa)
GVVALGPIVTRTRLPKDEVVRAEDLPVRASADTVHKNSPGHKATTGGLIVVDIDTLQLQVRGTGVAPSWVNAMLITHHLPELGTDLVAALPTLDVQDF

Sequence

>CNT30388443
CGGTGTAGTGGCCCTTGGCCCAATTGTTACCCGCACCAGATTGCCCAAAGACGAAGTTGTCAGGGCGGAAGATCTGCCCGTAAGGGCCAGTGCGGACACT
GTCCATAAGAACAGCCCGGGGCACAAAGCGACCACAGGAGGCCTCATTGTAGTAGACATTGACACGCTCCAACTGCAGGTCAGAGGTACCGGTGTAGCGC
CCAGTTGGGTCAATGCCATGCTCATCACACACCACCTCCCAGAACTTGGCACCGATCTGGTTGCCGCATTGCCCACCCTGGATGTGCAGGATTTCCC