Detailed information on CNT30388347


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193386Triticum turgidumSecale cereale75.5244.9988.46364forward
CNT30222985Triticum turgidumHordeum vulgare59.3461.1188.11286forward
CNT30438202Triticum turgidumAegilops tauschii63.4948.1992.16306forward
CNT30660836Triticum turgidumTriticum dicoccoides66.1852.399.37319forward
CNT30682184Triticum turgidumTriticum urartu70.3350.2299.41339forward

Expression of CNT30388347

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DSKRCIRCFKRAFSWSISNPGTSQVDSKHGPEAGL*

>peptide 2 (57 aa)
IPSGAYVALREHSAGLLATQAPRKLIVNMGQKLVYNTNTCIVNMGQKLVYNTNTCIG*

>peptide 3 (44 aa)
MYRLNHGRFYLGVGLHAWECTCSAHAGRCLHTYKDPRSGSVTWY*

>peptide 4 (51 aa)
MHGSAPALLMLAGAYIHTKTLDQVALHGTRWMDGSIIDMMHARGACMIDDQ*

>peptide 5 (41 aa)
MINDLAAAAGAAAAGAALALGAAAAAILRRHLHPAGAPAPIH

Sequence

>CNT30388347
CGATTCCAAGCGGTGCATACGTTGCTTTAAGAGAGCATTCAGCTGGTCTATTAGCAACCCAGGCACCTCGCAAGTTGATAGTAAACATGGGCCAGAAGCT
GGTCTATAACACAAACACATGTATAGTAAACATGGGCCAGAAGCTGGTCTATAACACAAACACATGTATAGGTTAAACCACGGGAGATTTTATTTAGGGG
TCGGTTTACATGCATGGGAGTGCACCTGCTCTGCTCATGCTGGCAGGTGCTTACATACATACAAAGACCCTCGATCAGGTAGCGTTACATGGTACTAGAT
GGATGGATGGATCGATCATAGATATGATGCATGCGCGCGGTGCATGCATGATCGATGATCAATGATCTAGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTG
CCGCACTTGCACTGGGTGCAGCCGCAGCCGCCATTCTCCGCCGCCATCTCCATCCCGCCGGAGCTCCTGCACCCATCCATCC