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Detailed information on CNT30388298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689996Triticum turgidumOryza sativa13.4923.3591.0378forward
CNT30291489Triticum turgidumTriticum aestivum44.2960.09100256forward
CNT30660459Triticum turgidumTriticum dicoccoides56.2350.23100325forward

Expression of CNT30388298

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LARHQVARRDKYICANINLDHGIEAFIIEDVHTYTKIREG*

>peptide 2 (65 aa)
MAAPTASPPVAILRRRQATTEPSSCATQYTTALSRLMLPPTKSANACASAAAISPAGVVAPPSVSL

>peptide 3 (98 aa)
MDEMRLRFSVVGGGELLVGALADEADVVDEGGDGGAHGLAAGGDLEEEAGHDGAEQLRHPVHHGLEQADVAAHEERERVRQRRRDKPRRRRRAAVSQLA

Sequence

>CNT30388298
ATTGGCAAGACATCAAGTTGCTAGGAGAGACAAATACATTTGTGCAAACATCAATCTTGACCATGGAATAGAAGCATTCATAATTGAGGACGTACATACA
TACACCAAGATAAGAGAAGGATGAGATTATTCCTGACTGACTGACTCGCACACACTGTTTACCCTGAATTTCTCAAGGACAAGATAGCGCAATGAAACTA
AACTGGCTTACTGATGATGACGCGACGACGTACACTTGCTGGAATTTTTGAAGCGATTTCAATCTCTCATGGCGATGACGGATGGACGAGATGAGATTGA
GGTTTTCAGTAGTCGGCGGTGGGGAGCTGCTCGTGGGGGCGCTGGCCGATGAAGCAGATGTCGTAGACGAGGGCGGCGATGGCGGCGCCCACGGCCTCGC
CGCCGGTGGCGATCTTGAGGAGGAGGCAGGCCACGACGGAGCCGAGCAGCTGCGCCACCCAGTACACCACGGCCTTGAGCAGGCTGATGTTGCCGCCCAC
GAAGAGCGCGAACGCGTGCGCCAGCGCCGCCGCGATAAGCCCCGCCGGCGTCGTCGCGCCGCCGTCAGTCAGCTTGCC