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Detailed information on CNT30388224


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT002444, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403504Triticum turgidumBeta vulgaris48.3780.5494.94178forward
CNT3087623Triticum turgidumVigna radiata52.7293.2793.81194forward
CNT30483432Triticum turgidumChara braunii45.9282.8488.17169reverse complement

Expression of CNT30388224

Peptides detected in this lncRNA

>peptide 1 (42 aa)
GEPASSGFEWHFTPNHNSSVDSSTSVGSDLCLVSSKLHPGHG*

>peptide 2 (44 aa)
MSRRLILQQARGQRSLSPPTAWELSMVSRSISLPTGGSFHLSLTV

>peptide 3 (31 aa)
ENQLALGSSGISPLTTTHPLILQHQSVRTSA*

>peptide 4 (81 aa)
MDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGT

Sequence

>CNT30388224
GGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT
TCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATCGCCCTATTAAGACTCGCTTTCGCTACGGCTCCGGT
GGGTTCCGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAG
CTCAGCATGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACT