« Back to Triticum turgidum search


Detailed information on CNT30387764


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 4e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Triticum turgidumOryza sativa30.7842.8689.38273forward
CNT30531266Triticum turgidumEucalyptus grandis21.7645.6382.38193forward
CNT30548370Triticum turgidumIpomoea triloba5.9822.7588.6853forward
CNT30159576Triticum turgidumPistacia vera19.521.8483.24173forward
CNT30289517Triticum turgidumTriticum aestivum62.34100100553forward
CNT30569510Triticum turgidumActinidia chinensis9.2439.4295.1282forward
CNT30589490Triticum turgidumMusa acuminata11.535.1792.16102forward
CNT3085023Triticum turgidumVigna radiata21.238.8481.91188forward
CNT30553402Triticum turgidumOryza glaberrima30.7852.289.38273forward
CNT30436608Triticum turgidumAegilops tauschii31.9139.3698.94283forward
CNT30659451Triticum turgidumTriticum dicoccoides40.47100100359forward
CNT3079298Triticum turgidumBrassica juncea9.8120.4787.3687forward
CNT30228928Triticum turgidumAnanas comosus17.3639.4986.36154forward
CNT30218729Triticum turgidumKalanchoe fedtschenkoi16.6951.0381.76148forward
CNT30653715Triticum turgidumRosa chinensis16.5725.2187.07147forward
CNT30214941Triticum turgidumHelianthus annuus9.2432.1690.2482forward
CNT30680357Triticum turgidumTriticum urartu20.2963.3897.78180forward
CNT30596194Triticum turgidumOryza meridionalis30.7862.7688.28273forward
CNT30370054Triticum turgidumOryza glumipatula30.7852.289.38273forward
CNT30109688Triticum turgidumOryza longistaminata30.7851.5189.38273forward
CNT30331328Triticum turgidumDioscorea rotundata27.9648.3486.29248forward
CNT30148068Triticum turgidumBrachypodium distachyon13.1920.2191.45117forward
CNT30101372Triticum turgidumOryza rufipogon30.7836.2189.38273forward
CNT30576241Triticum turgidumOryza barthii30.7841.1889.38273forward
CNT30116534Triticum turgidumOryza nivara30.7863.1989.38273forward
CNT30113851Triticum turgidumFicus carica9.0228.889580forward

Expression of CNT30387764

Peptides detected in this lncRNA

>peptide 1 (43 aa)
WEVSFFLQVARGRRRKQMETAGGREREEEASLRGCPMRPSCCR*

>peptide 2 (75 aa)
MTAAPRLLAGLMPVPVMGMVARCTMKTANPMGSGASTGTWESRALRLGSVAEKTVYTSTKVTAGLMWPPEMPAVQ*

>peptide 3 (93 aa)
GRLASSCKLQEVEEENRWRRREVERERKKLHYVVVPCGLLVVDDCGAEAPGGVDAGAGDGDGGEVHHEDGEPDGERGQHGDVGVAGAALGVGG*

Sequence

>CNT30387764
ATGGGAGGTTAGCTTCTTCTTGCAAGTTGCAAGAGGTAGAAGAAGAAAACAGATGGAGACGGCGGGAGGTAGAGAGAGAGAGGAAGAAGCTTCATTACGT
GGTTGTCCCATGCGGCCTTCTTGTTGTAGATGACTGCGGCGCCGAGGCTCCTGGCGGGGTTGATGCCGGTGCCGGTGATGGGGATGGTGGCGAGGTGCAC
CATGAAGACGGCGAACCCGATGGGGAGCGGGGCCAGCACGGGGACGTGGGAGTCGCGGGCGCTGCGCTTGGGGTCGGTGGCTGAGAAGACGGTGTACACC
AGCACGAAGGTGACGGCAGGGTTGATGTGGCCCCCCGAGATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATGCCGCCGAAGGCCCAGGCGATGCCGA
GCACGCCGACGCCGCCGCACGGGTCGGCCGCCGACTGCACCTTGTAGCCGATGACGGTGGCGACGGTGATGTAGAGGAAGAGCAGCGTGGCGACGAACTC
GGCGATGAGGGCCCGGTAGAAGGACCACATCCGGAGCTCCCCCATGTCGAACAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTTGTGCGCCGGCGCGGCG
TGCTCCGGCTCCTCGCTCACCTCCTTGGCCATGGCTGCTGCAGCGTGCGGACGTTCTCCTCTCTCTCTCTTCTGTGATGGATGGATGGGTGGGGGTGGTG
GAGTGTGATGAGCGAGTGTGAGGACAGGGCAGGACAGGCGCGGTTTTATTGAGCGAGCTGCGGTGCGGCGCTGTCTTCAATACCAAAAGGCCATTGTCGA
GACAGCCGTGCTTGCTTCCGGTTCCAGCTGTCCCGTTTCGGTTGCTTAACTTGTCTACTATAGAATGGATGGATAATGCGAGTCGCG