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Detailed information on CNT30387749


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZP9|CP122_ARATH, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674439Triticum turgidumSetaria viridis20.2554.8992.25129forward
CNT30523223Triticum turgidumSetaria italica36.4246.5987.07232forward
CNT30515591Triticum turgidumJuglans regia21.9826.9781.43140forward
CNT30617555Triticum turgidumSesamum indicum20.0921.2684.38128forward
CNT30729972Triticum turgidumCorchorus capsularis21.0423.2685.82134forward
CNT30710175Triticum turgidumGlycine max18.6830.0584.87119forward
CNT30287995Triticum turgidumTriticum aestivum51.0285.5396.92325forward
CNT30586289Triticum turgidumMusa acuminata16.0135.9294.12102forward
CNT30246479Triticum turgidumAvena sativa37.6836.0993.75240forward
CNT30659185Triticum turgidumTriticum dicoccoides83.6710099.81533forward
CNT30134237Triticum turgidumLolium perenne37.523893.72239forward
CNT3015512Triticum turgidumZea mays36.8927.3381.7235forward
CNT30216686Triticum turgidumKalanchoe fedtschenkoi30.1433.4585.94192forward
CNT30620908Triticum turgidumCajanus cajan21.0418.8789.55134forward
CNT30580422Triticum turgidumEchinochloa crusgalli35.0133.2386.1223forward
CNT30497736Triticum turgidumDigitaria exilis36.1133.1486.09230forward
CNT30557621Triticum turgidumPanicum hallii34.6940.2689.14221forward

Expression of CNT30387749

Peptides detected in this lncRNA

>peptide 1 (32 aa)
CQVYRASIFFNGKGRPDTRLYTIPMHTSIIQL*

>peptide 2 (49 aa)
MSLGKYLARFYYIHPDRVSNGRLRHSRFSRAPMSQEHHVHLHYPPSRTN*

Sequence

>CNT30387749
TGTCAGGTTTATAGAGCTTCCATTTTTTTTAATGGAAAAGGACGACCAGACACTCGCCTCTACACCATACCCATGCACACATCCATAATACAACTTTAAA
TAAACGTCTGTAATATCAATTGTATATCAACCACGTATGTCCCTGGGAAAATATTTGGCGCGTTTTTACTACATACATCCCGATCGTGTAAGTAACGGTA
GGTTGAGACATAGTAGGTTTTCTCGGGCTCCCATGAGCCAAGAACACCACGTCCACCTTCACTATCCGCCGTCCAGAACAAATTAGCACGTACGCTCAGC
TGTCGTAGGTGCGGCACTCGTCGGTCTCGGGGTTCTCCTTGCAGTAGTTCTCGAGCGGGTCGGAGTCCTTGAGCTTGTCCCGGGCGTGGCTGGCGGCGGC
GCTGAGCTCCTCCACCTCGTCCCACGCCGCCGCGCACTCCCCGCTGGCGGCGTCCTCCGAGCACGTCTCCTGGGCCTCCTTGATGCTGTCCGACATCTTG
TCGGAGATGCCCGGCGGCGTGGCCTGGCGAGGACGTCGCCCCTGGCCGTGGGCGCGAAGGTAGACAGGCTCACGTTGGTGAGCGCGGACGCCATTGCAGG
GTGTGGTGGATCGACGGAGATTTTATGTGGTTAGGCT