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Detailed information on CNT30387746


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697140Triticum turgidumOryza sativa10.422.0686.6760forward
CNT30180424Triticum turgidumSecale cereale62.0555.3394.13358forward
CNT30221624Triticum turgidumHordeum vulgare77.1265.6390.11445forward
CNT307034Triticum turgidumZea mays25.318.587.67146forward

Expression of CNT30387746

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MEHSSFGIHFQFHMVIYGAPSLLSMLFLTFLPLRIK

>peptide 2 (38 aa)
MCSHGAFKFWNPLPVPYGDLWSTFFAVYAISHISSFANQ

>peptide 3 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKDQRFKANENKPVMNE*

Sequence

>CNT30387746
CGCGAAGGTGAGGGGTACAAAGCAGCCGAACCCGTGCGTCTCACCCTCTCCCACGAACCCTAGCTAGGCTCTTCACATCGGCGGCGGCGGCAGCGAAGAA
GAAGAAGAGAAGAAGAAGAAAGATGATCTACGACGTGAACTCCCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTCCGACAAGAGGAAA
ATGGAAGAGCAGAAGCCGAAAGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTAATGAACGAATGAGCATCGCCTGGACAGTCCGGTGCCTGCAAGG
CCTAGCTGCCAATCATGTGACACTCCTATGTTAAAATGAGTGGTGTGAACATCTGCTTGGTCGTTCTGAAAACTATCCAAGTATCCAGTACTGTGTTTTA
AGTTCCTATATATCTGAACTGCATGCCTGGAATGATAAATTAGGAGATTTTATCTTGTGATGTGTTCTCATGGAGCATTCAAGTTTTGGAATCCACTTCC
AGTTCCATATGGTGATTTATGGAGCACCTTCTTTGCTGTCTATGCTATTTCTCACATTTCTTCCTTTGCGAATCAAG