« Back to Triticum turgidum search


Detailed information on CNT30387601


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05855|PER1_WHEAT, E-value = 2e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180112Triticum turgidumSecale cereale40.8934.1496.46339forward
CNT30680601Triticum turgidumTriticum urartu37.6489.6695.19312forward

Expression of CNT30387601

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRSCGRRCRTCWASSCPGSPGCRCRRTGGSWP*

>peptide 2 (97 aa)
MPKCHQASVHLHSVCECNKVGLMVILLAFAREIEDSTVVTYVGTCMICCCTYLEKYTCFKCWYDNRYWPLLLGPYSLTCRSGELPTCRSITSSPWSS*

>peptide 3 (66 aa)
MFPILIIAVVKALLKAAALDAKLRTALSNVLGVVVSRFARLPLPPDWGQLALRDVAKAVLMLVAPP*

>peptide 4 (57 aa)
MVCAPESATMSTVLRFFLRNAASSCDRLEPGPGRSLFASAALAVVESRLPSGTVHDGP

>peptide 5 (45 aa)
ILDFAFYVLHFSPNIGGKISLNNRARSLHAKMSSGKCASSFRVRV*

Sequence

>CNT30387601
TGATCCTTGACTTTGCGTTCTATGTGCTCCATTTTTCTCCTAACATTGGGGGAAAAATCTCGTTAAATAATAGAGCACGGTCACTTCATGCCAAAATGTC
ATCAGGCAAGTGTGCATCTTCATTCCGTGTGCGAGTGTAATAAGGTAGGGTTGATGGTAATTCTCCTTGCCTTCGCAAGAGAAATTGAGGATTCAACCGT
CGTTACATATGTAGGTACATGCATGATTTGCTGCTGCACATACTTAGAGAAATATACATGTTTCAAGTGCTGGTATGATAATCGGTACTGGCCACTGCTT
CTGGGGCCTTATTCGTTGACGTGTCGTTCTGGCGAGCTGCCGACGTGTAGGTCAATCACGAGTTCACCTTGGAGCAGCTGAGCCTGATCTGCCCCTGCGT
CCCGGTGAGCGGCGCGATGTTTCCCATCTTGATCATCGCCGTCGTGAAGGCGCTGCTGAAGGCCGCCGCGTTGGATGCGAAGTTGCGGACGGCGTTGTCG
AACGTGTTGGGCGTCGTCGTGTCCAGGTTCGCCAGGTTGCCGTTGCCGCCGGACTGGGGGCAGTTGGCCTTGAGAGACGTCGCGAAGGCAGTGTTGATGT
TGGTGGCACCGCCGTAGATTCGAGTCCGGAAGTTGGAGCACTGGGCCTTCCCGATGGTGTGCGCGCCTGAGAGCGCGACCATGTCGACCGTGTTAAGGTT
CTTCTTGAGGAACGCGGCCTCGAGCTGTGACCGGCTGGAGCCAGGGCCTGGGAGGTCGCTGTTCGCCAGCGCCGCACTTGCGGTGGTGGAGTCCCGTCTC
CCAAGTGGAACAGTCCATGACGGCCCTCC