Detailed information on CNT30387575


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186982Triticum turgidumSecale cereale4.7720.5789.11101forward
CNT30289121Triticum turgidumTriticum aestivum75.0870.091001591forward
CNT30226738Triticum turgidumHordeum vulgare13.1721.484.95279forward
CNT30659703Triticum turgidumTriticum dicoccoides13.552.4899.3286forward

Expression of CNT30387575

Peptides detected in this lncRNA

>peptide 1 (69 aa)
SSPSLMCRSKKKLAMDPFLPLEGSLYFSFGPHRHISSRTQPPKPPPPPPPPPQPFLSSSPPCSPALAYL*

>peptide 2 (32 aa)
MRERRIEVATKYPTNALVDRLALISLILHCRP*

>peptide 3 (34 aa)
MIQYGVVEDLNKRWKHLILNTTVQALGGVEQTFD*

>peptide 4 (41 aa)
MMPIDAATSGRSRMRPPELDNGASLDVEEVRPEERHVLPLV*

>peptide 5 (50 aa)
MLLVGISVLPLLHLHLRSISSLKLWERDGGICSVRCGTRYCRSCSRTAST*

>peptide 6 (56 aa)
MLVFRCELKKRLRVISSNLSVPQYKIIFQAMWDGGSIFQIVKLSYIYMKNVGDLYFQ

>peptide 7 (57 aa)
MLARDSTPAAAPVRRWNSWRRSWRCASYCTSTNILIFYFFANQTGNHTILFLSCKPH*

>peptide 8 (62 aa)
MQQNGVDLIFWRAESNQNMYQGTMTYLASVCEDGKIWSWHLTFDKSVSSKKINPARPLRVVR*

Sequence

>CNT30387575
CTCGTCCCCGTCTTTAATGTGTCGAAGTAAAAAAAAATTAGCGATGGATCCCTTCCTTCCCTTGGAAGGTAGCCTCTACTTTTCTTTTGGCCCACATCGT
CACATCAGCTCTCGCACGCAACCTCCAAAGCCTCCGCCGCCGCCGCCGCCGCCGCCTCAGCCATTTCTCTCGTCTTCTCCTCCCTGTTCCCCTGCCCTAG
CCTATCTCTAGCACTCCGCCTCTCCCTTTCTTCCTCGAGTACGGCAGCGGAAGGGGGGCCGCGACGGGAGAGAGGTTCTCCGCCCCCGACAGACGACGTC
ACCGCCTCCGACCTTGGCCTCGTCTGCAGCAGCAGGGACCTCTGCCCGTGTGTCTCTGTCTCGCTGCTCATCCTCCGGGAGGGGACTCGGAAGGAGGGTC
ATGCTCCTGGTTGGGATCTCCGTGCTCCCGCTCCTGCACCTCCATCTGCGTTCGATCTCGTCACTGAAATTGTGGGAGCGGGACGGCGGGATCTGCTCCG
TCCGGTGCGGGACGCGCTACTGTCGCTCATGCAGCAGAACGGCGTCGACCTGATCTTCTGGAGGGCAGAGTCGAACCAGAACATGTATCAAGGGACCATG
ACATATCTAGCATCGGTATGTGAAGATGGCAAGATCTGGTCATGGCATCTGACTTTTGACAAGTCAGTATCTTCCAAGAAAATTAATCCTGCTCGGCCTC
TTCGCGTGGTTCGTTGAGTGATGGGTCGTGCCATTGTCTAACTGGGTGCCCCTCGCGGCCGCCGTCTGGGCGATGATTCAGTATGGGGTTGTAGAAGATT
TGAACAAAAGATGGAAGCACCTTATACTGAACACAACAGTACAGGCCTTGGGAGGGGTTGAACAAACTTTTGATTGAAGTTTGGCCCAACTACATGGAAC
CGAAACTATCAAGGAAGTTTCGTGCTTGGATGCAACTCAGTAGTTGGTAGTTCAAAAGGTTTCACAAATAACATTAGATTATACTATATGCATCTGATCC
ATGGAAGTTGATTATGTAGAATCAAATCATTTCAAAATTCCTTTTGATTCTGTTGATTTGAGGTAGACGGTACACCTGCTGCAGTGGACTTCGTCGTCTC
ATCAGCATGCTCGCCCGCGACAGTACACCTGCTGCAGCTCCGGTGAGACGCTGGAACTCATGGCGGCGCTCATGGCGGTGTGCCTCATACTGTACCTCAA
CTAACATATTGATCTTCTACTTCTTTGCTAATCAAACTGGGAATCATACTATTCTCTTTCTGTCCTGTAAGCCCCACTAATCACTAGGTCTCATTACTCT
TTCTATCCGACGTGGCATGCGAGAGCGAAGGATAGAGGTGGCCACGAAATACCCAACAAATGCACTTGTCGATCGTCTTGCTCTTATTAGCTTGATACTG
CACTGTCGGCCCTGAATCCTTGGATATTGGGAAGTTTGAAGAAGCATGTGGTGTAGATGATGCCCATCGACGCTGCTACCTCCGGAAGGTCACGGATGAG
GCCACCCGAGCTGGACAACGGGGCGTCTTTGGATGTGGAGGAGGTCCGACCAGAGGAGCGGCATGTACTTCCCTTGGTTTGAATACTATGGAGATGATGG
AGAGGATCAGTAGAAGGATGAAGATGGTGTAGGCCATGGAGGCATGAACCCACGTTGTGGCAAGGTTTAGGACTTGCTGATCTAGAAAGGAGAGCGATCA
AGAAGAGAGCATTCATAATTACGGAAGAACCTTGTGGTTTGCCAAAAGACTTGAAGAGATAGAAGTATCAGGTGTGGTTTTGTCACAAAAAAGGAATCTG
AAGTCCTCTTTCATGCTTTCAAAGGTGTATGTAGTACAAAGATAGAGCATAATTGATTGAAACACCATGGATGTCCTTTTTTTTACTTTCTTTTCCTTTC
TTTTGAGATAGATGTTGTTTTATTTCCCTTCCCGTAATGTATGTATAGATGCTGGTATTTCGTTGTGAACTGAAGAAGCGTCTAAGGGTTATATCCTCTA
ATCTCTCCGTACCACAATATAAAATCATTTTTCAGGCTATGTGGGATGGAGGGAGTATCTTTCAAATAGTCAAACTGTCGTACATATACATGAAAAATGT
TGGTGACCTCTACTTTCAA