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Detailed information on CNT30387142


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30658331Triticum turgidumTriticum dicoccoides52.6894.2896.81659forward

Expression of CNT30387142

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MNTIDQHLVLKERPGHKSKITPYGLPIHCGGSPQARRLKGSSSCFRFRVVYGH*

>peptide 2 (57 aa)
MVRLLYIINITLVLYMCSRACSTTYVRTNTDHMEREICSGRKAESWTKVKFTNDHHT*

>peptide 3 (33 aa)
MLHNLCSYKHRSYGTRNMLWSESRVVDKSEVHK*

Sequence

>CNT30387142
ACATGCAGATACATATGCCAAGATTAGTTCTAACAATTTTTAATTGCCAATAAGGAAATCTTAATGTCAAATACTGAATTCTTCCACCAACTAGGTGTGA
GACATATCCATCGCAGTGCCAAATAAAGAAAGTTTTCCGAGAATTAACAGCAGGACAATGGTCCGCTTGTTGTATATAATAAATATCACACTGGTGTTGT
ATATGTGTAGCCGTGCATGCTCCACAACCTATGTTCGTACAAACACAGATCATATGGAACGAGAAATATGCTCTGGTCGGAAAGCAGAGTCGTGGACAAA
AGTGAAGTTCACAAATGACCATCATACATAGGCCATTGTTTCAACTTGTAGTTTAGGCCTTGCCGGACTCCTCGCAACCTGGTGGCCTTGCCGGACTCCT
CGCAACCTGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACACGGACATAGGCATCAGGGTACTCCTTCTT
GACCTCCTCCACCTCGTTGAGCACCTGCGTGGCGTCGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTC
GTTGAGCACCTGTGTAGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGACCATCGTAGTACCCGGGGGAGCTGTTGTGCTCACGG
AAAACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAAGTAGTCGACCTGCTTTAGGAGGGCCTCCGTGGAGAGGGGTGGCA
AGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATAGATGGAATGAACACAATTGATCAACACTTGGTGCTTAAAGAAAGACC
TGGCCATAAGTCAAAAATTACTCCTTATGGTCTGCCCATACATTGTGGGGGGTCTCCACAAGCAAGAAGGCTCAAGGGCAGCAGCTCTTGCTTCAGGTTC
AGGGTAGTGTACGGGCATTAAAAATGATATTATCTAGTACACATTGCGATAAAATCAATTTCCGTTCACAAAGTTTATGAGTTAAATATTCCTACACATG
TGAACCTGCTTACGGACTACATACATTGTGATGCACCATCTTAGTTTACTTTGGCCTGGTGTGTGGGTTACACATCCTAATTAAGGATAGCTTTGGCTAT
GTACAGTGGAAATATCCGATAAATTAATCAACTGTGCCGACAAGAATATTC