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Detailed information on CNT30387046


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180942Triticum turgidumSecale cereale92.5892.1992.1873forward
CNT3081457Triticum turgidumBrassica juncea5.9425.9387.556forward
CNT30132778Triticum turgidumLolium perenne26.1931.0791.5247forward
CNT3017302Triticum turgidumZea mays16.3321.5792.21154forward
CNT30585288Triticum turgidumEchinochloa crusgalli16.5430.9592.31156forward

Expression of CNT30387046

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MNWIGRKIHLYNVNIGLYMLDWWERYLFNTLMLCLLWYILRYLTGFFQSNLETILQGANYLLQGS*

>peptide 2 (29 aa)
MRCCVCSCLLLYVCIVHGGCNILMLLILS*

Sequence

>CNT30387046
CTGACGCTACGCGTCTATCAGCCGGCAGAAACGACTCGGTTTCTTCTCATTAGCGAGGGTGGCAAAAACAGAAACTAGGTGTCCACGGAAAAAGCCTTAC
ATGTGAAGTTCAGATCTGAAGCGTTTAGCTTCCGAACAAACCCACGCCATCGACCGAGAGAAGATCCTCTGAGAGACCCCGCCCGATCCCGCAAGACACC
AGGCCGTTCTTCCTCCTCAGAAAGTTCGACATCTCGCCGCTTGTTTCCGGATCTGAGCGAGGGATCTGCGGCGTCGGGTCTCTTTGGGGGAGGATGAACT
GGATCGGGCGCAAGATCCACCTTTACAATGTCAACATCGGCCTCTACATGCTCGATTGGTGGGAGCGCTACCTCTTCAATACATTGATGCTTTGCCTTCT
CTGGTACATTCTACGGTATCTCACTGGGTTCTTTCAAAGTAATCTGGAGACCATCCTACAAGGTGCGAACTACCTTCTACAAGGTAGTTAATCATCGAAG
GCAAAAGCACATATGTTGATGGCTTTGTGGAACTCCCCCTGTAATCTATGTTTTGATTAGTCTCAACTGAGAAACTAGAAAGGAACGACTTATGCGTTGT
TGTGTTTGTAGCTGTCTTTTACTGTATGTTTGCATTGTCCATGGTGGTTGTAATATATTGATGTTGCTGATTCTCAGTTGACTGCCTGGAACTTATGTAA
ATCTAGTCACCTCGGTTTGCACATCCCTAAACCTAAAATTTGCAGTCCCAACTTTTAGTCTTGTCATTTTTCTTAGTTGGGTTCATCCTGTCCAGTAATT
ATGTAAGAGGATGTCATGAACTTGGCTATGCACTGTCATATGTATAGCCCTCTGTATTTTGGAATTTAGCAATTTTTTACCTTACGTATTGTGGACTTCA
AGTAATTTTTTGCTGAAGCGTTTTTATTACTAGTTTTGCGTGA