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Detailed information on CNT30386779


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL3|NLTP3_ORYSJ, E-value = 1e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676336Triticum turgidumSetaria viridis5.7421.593.0243forward
CNT30436289Triticum turgidumAegilops tauschii57.5495.3594.9431forward
CNT30250949Triticum turgidumAvena sativa26.1748.8885.2196forward
CNT30658660Triticum turgidumTriticum dicoccoides97.46100.2790.68730forward
CNT30138315Triticum turgidumLolium perenne19.4964.0484.93146forward
CNT30680726Triticum turgidumTriticum urartu22.4351.8591.07168forward
CNT30578365Triticum turgidumOryza barthii22.329.5180.24167forward

Expression of CNT30386779

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MYLLQLTLLLMGKETETPHLPGMLAALPMLMPLNDPARFLRQRHAACRSAEVDALPFRVLTPLQHPAEGDDACPVA*

>peptide 2 (43 aa)
NLSSSHYFIDDSISNLLDLKQGQQMEVEHMQKTTMNRRREQQQ*

>peptide 3 (67 aa)
MHGAMADVTSLQVTAPDAISATASAASTLNTASSATRAIEDLVLQLPCWKWSWEGAESLIGLCGGGGD

>peptide 4 (36 aa)
MLAPSRRTCTARWRTSRRCRSPPQTPFPPPPVRRAR*

Sequence

>CNT30386779
AAAACTTAAGCTCGTCACATTATTTTATTGATGATTCGATCAGTAATCTGCTCGATCTGAAACAAGGACAACAGATGGAGGTGGAACACATGCAGAAAAC
AACAATGAACAGACGCAGAGAGCAGCAACAGTAGACACCGAGTCGGCTAGCTAAGCCTGGTGTGATGATGATGCTCGTAGATAACTTAATGAAGGCTGCA
AACACACAGACACAAAAGCTCAACGATTAGTCTTACTATTTATACTTACAAATTAAGATTAAATGGCTAACGAGTACTTAGAATATAATCTTTCAAGTTA
GGAGTGGAGGATGTACTTGTTGCAGTTGACGTTGTTGTTGATGGGGAAAGAGACGGAGACGCCGCACTTGCCGGGGATGTTGGCGGCGTTACCCATGCTG
ATGCCATTGAACGACCCCGCCAGGTTCTTGAGGCAGCGGCACGCCGCCTGCCGGTCTGCCGAGGTGGACGCCTTACCGTTCAGGGTCCTCACCCCGCTGC
AGCACCCCGCCGAGGGTGACGATGCTTGCCCCGTCGCGTAGGACATGCACGGCGCGATGGCGGACGTCACGTCGCTGCAGGTCACCGCCCCAGACGCCAT
TTCCGCCACCGCCAGTGCGGCGAGCACGCTGAACACGGCGAGCAGTGCCACGCGAGCCATCGAGGATCTAGTGCTTCAGCTTCCTTGCTGGAAATGGAGC
TGGGAAGGAGCAGAGAGCTTGATTGGCTTGTGTGGTGGTGGTGGAGATG