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Detailed information on CNT30386576


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 6e-52

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Triticum turgidumSetaria viridis43.3462.196.06254forward
CNT30523218Triticum turgidumSetaria italica52.3956.2395.44307forward
CNT30546681Triticum turgidumIpomoea triloba40.7850.8583.68239forward
CNT30703567Triticum turgidumQuercus lobata40.2746.7383.9236forward
CNT30617135Triticum turgidumSesamum indicum50.3429.4183.73295forward
CNT3042757Triticum turgidumPrunus dulcis46.0844.5584.44270forward
CNT30221015Triticum turgidumHordeum vulgare67.9275.5291.46398forward
CNT30437818Triticum turgidumAegilops tauschii53.4154.1595.53313forward
CNT30244338Triticum turgidumAvena sativa54.7857.8496.88321forward
CNT30450830Triticum turgidumSaccharum spontaneum53.0737.5696.46311forward
CNT30211318Triticum turgidumHelianthus annuus42.8364.5278.49251forward
CNT30680347Triticum turgidumTriticum urartu71.529.291.41419forward
CNT30370989Triticum turgidumOryza glumipatula51.3748.1693.36301forward
CNT30101647Triticum turgidumOryza rufipogon51.1932.1996300forward
CNT30496126Triticum turgidumDigitaria exilis54.2746.7694.34318forward

Expression of CNT30386576

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MRPEMRFTPPLLASLRIAGLVMPWMLSRRTFRWRLAPPFPSPLPPLPRPDMAAPLRGSVIGRKKRSCFGGSLMLAMGLGI*

>peptide 2 (38 aa)
MMVLQTTEHKRTTGSTSHPPRHNHTEKHGRHQHSTPRI*

Sequence

>CNT30386576
CTTATATAAACGATTTCGTCACTGAAGCATTTGGTCAGAATTCAGGATCAGAACAGTTTCATTGAACGCATGATGGTATTACAGACTACTGAACACAAAC
GCACGACAGGGAGTACATCCCATCCACCACGGCACAATCACACAGAGAAACACGGCCGCCACCAGCACAGCACACCACGCATCTAGCCTCCGAAGCCGTA
GAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGTATGACG
TTCTCGAGGAAGATCTTGAGGACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTGGCCAGCCTCCGGATCGCCGGCT
TGGTGATGCCCTGGATGTTGTCGCGGAGGACCTTCCGGTGGCGCTTGGCGCCGCCCTTTCCCAGCCCCTTGCCGCCCTTGCCGCGCCCGGACATGGCCGC
TCCTCTCCGAGGGAGTGTGATTGGGAGGAAGAAGAGGAGCTGCTTTGGAGGGAGTCTGATGCTTGCGATGGGATTGGGGATTTGAG