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Detailed information on CNT30386515


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 1e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672503Triticum turgidumSetaria viridis26.0139.2681.67360forward
CNT30521106Triticum turgidumSetaria italica26.0149.6681.67360forward
CNT30181095Triticum turgidumSecale cereale57.5151.6293.09796forward
CNT30287280Triticum turgidumTriticum aestivum53.6186.5897.04742forward
CNT30555612Triticum turgidumOryza glaberrima27.636.5687.43382forward
CNT30136970Triticum turgidumLolium perenne27.8960.4187.82386forward
CNT30597241Triticum turgidumOryza meridionalis22.3335.4885.44309forward
CNT30578612Triticum turgidumOryza barthii22.3327.3286.41309forward
CNT30551876Triticum turgidumOryza brachyantha25.5141.0585.55353forward

Expression of CNT30386515

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MHLILPPLLTLLRPAVDLRPWKGATEVAEEAITVGAMVLEERRRGGCRLQLRT

>peptide 2 (31 aa)
MGRSHMHCWVVHNEESLRVALKLMGTLEVLR*

>peptide 3 (30 aa)
MKNMLWSSSRVVDKSDVHKRPSYIGHCFNS*

Sequence

>CNT30386515
CCATAATCTTTTTGTATTGATAAGTAAAGAAACTGAAATTTGCAACTGCAAATCAGGGGATCTTAATGTCAAATACTGAATGCTTCCACAACTAGTTGTG
AGACATATTCATTGCAGTGCCAAATAAAGAACCTTTTTCATGAATTAATAACAGCAAGACAATGGTCCGCGTGTTGTATATAATAAATATCACACAGGTT
TTGTATATGTGTAGCCGGTTCTAGAATTTGCATATGCATGCTCGAGAACCTATGTTCGTACATACATACACAGACCATATAGAATGAAAAATATGCTCTG
GTCGTCCAGCAGAGTCGTGGACAAAAGTGACGTTCACAAAAGACCTTCATACATAGGCCATTGTTTCAACTCGTAGTTTAGGCCTTGCCAGACTCCTCGC
AACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGGGTACTCCTTCTTGAC
CTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGACCGTCATAGTATCCGGGGGAGCTA
TTGTGCTCACGGAAGACGAAACCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAAGTAGTCGACCTGCTTCAGGAGGGCCTCCGTGG
AGAGGGGTGGCAGGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAGAATGCGCAGATGCTCAATACTTGGTGCTAA
GTCTATTAACTGTACCAACAATGCTAGAAAAATCTGTTGATAAGCCAAAAATTGCTCCTTATGGGCAGGTCTCATATGCATTGTTGGGTTGTCCATAATG
AAGAAAGCTTAAGGGTAGCCCTTAAACTGATGGGCACTCTGGAGGTACTAAGATAATTTTATCTAGTCCATGCTGTAATAAAAAGTATTTCCATTCACTA
AGTTATGAGTTGATTGCTTTTACACACGGATCCCAGCTTATGGACAAGGCTAAATGAGCATCCAAAGCCAAATGGTTTCCATAGGCAACAAAACAAATAG
ATAATAAGGTTTCGGAATAATCTATTGACCAAATTATGTTATACATTGGGGATGTTCTGTAAGTGAATTACTTGTAATGACAAAGAAACTCATATCAGTT
TAATTAGTGACCGACATACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGCTGCTGAGGCCGGCGGTCGACTTGAGACCCTGGAAGGGTGCGACGGA
GGTGGCCGAGGAAGCCATCACAGTGGGGGCCATGGTGTTGGAGGAGAGAAGGAGAGGAGGATGCCGGCTACAGTTGAGGACCCC