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Detailed information on CNT30386449


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672247Triticum turgidumSetaria viridis24.2925.0592.5120forward
CNT30289434Triticum turgidumTriticum aestivum29.9625.5697.97148forward
CNT30221016Triticum turgidumHordeum vulgare74.2964.0584.47367forward
CNT30436341Triticum turgidumAegilops tauschii36.8459.8792.31182forward
CNT30251924Triticum turgidumAvena sativa24.4922.2497.52121forward
CNT30658643Triticum turgidumTriticum dicoccoides66.674.27100329forward
CNT30680880Triticum turgidumTriticum urartu69.2366.1599.71342forward
CNT30340854Triticum turgidumEragrostis tef24.2952.6395120forward
CNT30362957Triticum turgidumSorghum bicolor24.2915.1391.67120forward
CNT30370727Triticum turgidumOryza glumipatula24.723.3394.26122forward
CNT30102554Triticum turgidumOryza rufipogon24.731.4494.26122forward
CNT30604388Triticum turgidumOryza punctata24.2936.1493.33120forward
CNT30551356Triticum turgidumOryza brachyantha23.8934.193.22118forward

Expression of CNT30386449

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRISLFLRITKVLYCYVTCHYTHKHNSSVILRGR*

>peptide 2 (44 aa)
MLSIRDGPHDIVSSVDTYVRMCGYLDLPAYVHEPCMARAGWLAQ*

>peptide 3 (48 aa)
MHGARWLAGSVVRLELPALVVALAPLPEHDLGAVAHAAVVLVAVEGVEV

Sequence

>CNT30386449
GTGTTAGACTGTATTTACATGTGTATATTGTAACGTTGTATACCACCTCATTATATATATATATGTGATAGGCCACCCCTAGAGGGTTGTGCCGGTTCCC
CCCAAAGCCTATTGTCTTACACTGTGCATGCGTATTTCATTGTTTTTACGTATCACGAAGGTCCTTTATTGTTACGTAACTTGTCATTACACACACAAGC
ACAACAGCTCCGTTATTCTGCGGGGTAGGTAGCGAGAGACGCATGCATGTTGTCTATCCGGGACGGTCCACATGACATCGTTTCTTCAGTAGATACGTAC
GTACGCATGTGTGGATATCTCGATCTCCCCGCGTACGTGCACGAGCCATGCATGGCGCGCGCTGGCTGGCTGGCTCAGTAGTACGGCTGGAGCTTCCAGC
GCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCGCACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTT